View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_high_1 (Length: 639)
Name: NF15945_high_1
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Original strand, 3131435 - 3132060
Alignment:
| Q |
1 |
gaagttgaagaacggccagatgaagctcttatgattcttaaatatggtggtgttcttacacatgctggcagaaagcaggttcataataagagtcgtataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3131435 |
gaagttgaagaacggccagatgaagctcttatgattcttaaatatggtggtgttcttacacatgctggcagaaagcaggttcataataagagtcgtataa |
3131534 |
T |
|
| Q |
101 |
aagaaaaatattttctactctgtttgagacttgagtttgattatactgcttttatggttgagaataaatagtaaattttcacttataatcttctttccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3131535 |
aagaaaaatattttctactctgtttgagacttgagtttgattgtactgcttttatggttgagaataaatagtaaattttcacttataatcttctttccca |
3131634 |
T |
|
| Q |
201 |
gtcatcctaattaatttttctcttttttaggccgaagaactgggaagatattttcgaaataaaatatatccaggtaaaattcaaatatctcttcaagtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3131635 |
gtcatcctaattaatttttctcttttttaggccgaagaactgggaagatattttcgaaataaaatatatccaggtaaaattcaaatatctcttcaagtaa |
3131734 |
T |
|
| Q |
301 |
atttagttggttcctttatggttactttaataatccaaaattttcatggttgtctttaatatctgaagtgtctactttgaagtggtagtttttccctttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3131735 |
atttagttggttcctttatggttactttaataatccaaaattttcatggttgtctttaatatctgaagtgtctactttgaagtggtagtttttccctttc |
3131834 |
T |
|
| Q |
401 |
ttagtctgctctataatttatttatgattcctattatacacatctttacatttgtaaaatactaggtgaggagttgtacctgtgtattcaacgaagtctc |
500 |
Q |
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|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3131835 |
ttagtctgctctatcatttatttatgtttcctattatacacatctttacatttgtaaaatactaggtgaggagttgtacctgtgtattcaacgaagtctc |
3131934 |
T |
|
| Q |
501 |
tcataatcatactgttgtataatatccaagcaagcttgtgttgtgcgatatgtgaatacatacttgatgccaatacaataatgtcgcaacg-nnnnnnnn |
599 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3131935 |
tcataatcacactgttgtataatatccaagcaagcttgtgttgtgcgatatgtgaatacatacttgatgccaatacaataatgtcgcaacgaaaaaaaaa |
3132034 |
T |
|
| Q |
600 |
gtgatggtatcggtaattgtgttata |
625 |
Q |
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|||||||||||||||||||||||||| |
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| T |
3132035 |
gtgatggtatcggtaattgtgttata |
3132060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 1924708 - 1924745
Alignment:
| Q |
43 |
tatggtggtgttcttacacatgctggcagaaagcaggt |
80 |
Q |
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| T |
1924708 |
tatggtggtgttcttacacatgctggcagaaagcaggt |
1924745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 1924880 - 1924928
Alignment:
| Q |
229 |
aggccgaagaactgggaagatattttcgaaataaaatatatccaggtaa |
277 |
Q |
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||||||||||||| |||||||||||||| ||||| || ||||||||||| |
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| T |
1924880 |
aggccgaagaacttggaagatattttcggaataatatgtatccaggtaa |
1924928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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