View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15945_high_11 (Length: 417)

Name: NF15945_high_11
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15945_high_11
NF15945_high_11
[»] chr8 (1 HSPs)
chr8 (20-395)||(24078495-24078870)
[»] chr4 (1 HSPs)
chr4 (20-395)||(16438674-16439049)
[»] chr1 (1 HSPs)
chr1 (150-191)||(7894159-7894200)
[»] chr7 (8 HSPs)
chr7 (153-191)||(17785650-17785688)
chr7 (153-191)||(17787400-17787438)
chr7 (153-191)||(17789163-17789201)
chr7 (153-191)||(17790925-17790963)
chr7 (153-191)||(17792675-17792713)
chr7 (153-191)||(17794606-17794644)
chr7 (153-191)||(17798136-17798174)
chr7 (153-190)||(17796371-17796408)
[»] chr2 (2 HSPs)
chr2 (88-145)||(39153158-39153215)
chr2 (88-145)||(44895133-44895190)


Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 20 - 395
Target Start/End: Original strand, 24078495 - 24078870
Alignment:
Q  20 tccttgtgatgagcaacaacctcaaaaagcttcaaaacttcatcttcgttaaaattagaatgaggaaacaattcataactagacaaaaccagcagaaaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24078495 tccttgtgatgagcaacaacctcaaaaagcttcaaaacttcatcttcgttaaaattagaatgaggaaacaattcataactagacaaaaccagcagaaaac 24078594  T
Q  120 ccagaaccaccaaagaatcttcagtacatcctctcacagtctctttcaactcaagtgctagcttcattgcctcgtattttacgtctggatcaatatgtgg 219  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24078595 ccagaaccaccaaagaatcttcagtatatcctctcacggtctctttcaactcaagtgctagcttcattgcctcgtattttacgtctggatcaatatgtgg 24078694  T
Q  220 tgagattctcgtcagctgttctaaaagaaacatttgactcttctcaataactatgccttcctcccgtcgaatcatagtattccgaattatatctagaaca 319  Q
    ||||||||||| |||||| ||||| ||||| |||||| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24078695 tgagattctcgccagctggtctaacagaaatatttgagtcttctcaataattatgccttcctcccgtcgtatcatagtattccgaattatatctagaaca 24078794  T
Q  320 agttgtcccagattcggtgccgtttggagattaactaaaatgccattgtgattcaatccaggcccatttgagagca 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24078795 agttgtcccagattcggtgccgtttggagattaactaaaatgccattgtgattcaatccaggcccatttgagagca 24078870  T

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Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 20 - 395
Target Start/End: Complemental strand, 16439049 - 16438674
Alignment:
Q  20 tccttgtgatgagcaacaacctcaaaaagcttcaaaacttcatcttcgttaaaattagaatgaggaaacaattcataactagacaaaaccagcagaaaac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||  || |||||||    
T  16439049 tccttgtgatgagcaacaacctcaaaaagcttcaaaacttcatcattgttaaaattagaatgaggaaacaatccataactagataaaagtagtagaaaac 16438950  T
Q  120 ccagaaccaccaaagaatcttcagtacatcctctcacagtctctttcaactcaagtgctagcttcattgcctcgtattttacgtctggatcaatatgtgg 219  Q
    |||||||||||||||||| ||||| |||||||||| | || ||||||||||||||||| ||||||||||||||||||||||||||   ||| ||||||||    
T  16438949 ccagaaccaccaaagaattttcagcacatcctctcgcggtatctttcaactcaagtgccagcttcattgcctcgtattttacgtcacaatctatatgtgg 16438850  T
Q  220 tgagattctcgtcagctgttctaaaagaaacatttgactcttctcaataactatgccttcctcccgtcgaatcatagtattccgaattatatctagaaca 319  Q
     |||||||| || ||||| ||||| ||||| ||||| |||||||||||||| |||||||| ||| |||||| | ||| ||| ||||| ||||| | ||||    
T  16438849 cgagattcttgttagctggtctaacagaaatatttgtctcttctcaataaccatgccttcttcctgtcgaagcttaggatttcgaatcatatccaaaaca 16438750  T
Q  320 agttgtcccagattcggtgccgtttggagattaactaaaatgccattgtgattcaatccaggcccatttgagagca 395  Q
    |||||| |  |||||||||| |||||||||||||||||||||||||||| ||||||| ||| || || ||||||||    
T  16438749 agttgtgctggattcggtgctgtttggagattaactaaaatgccattgtcattcaattcagacctatctgagagca 16438674  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 7894200 - 7894159
Alignment:
Q  150 ctctcacagtctctttcaactcaagtgctagcttcattgcct 191  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  7894200 ctctcacagtctctttcaattcaagtgctagcttcattgcct 7894159  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 17785650 - 17785688
Alignment:
Q  153 tcacagtctctttcaactcaagtgctagcttcattgcct 191  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  17785650 tcacagtctctttcaattcaagtgctagcttcattgcct 17785688  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 17787400 - 17787438
Alignment:
Q  153 tcacagtctctttcaactcaagtgctagcttcattgcct 191  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  17787400 tcacagtctctttcaattcaagtgctagcttcattgcct 17787438  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 17789163 - 17789201
Alignment:
Q  153 tcacagtctctttcaactcaagtgctagcttcattgcct 191  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  17789163 tcacagtctctttcaattcaagtgctagcttcattgcct 17789201  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 17790925 - 17790963
Alignment:
Q  153 tcacagtctctttcaactcaagtgctagcttcattgcct 191  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  17790925 tcacagtctctttcaattcaagtgctagcttcattgcct 17790963  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 17792675 - 17792713
Alignment:
Q  153 tcacagtctctttcaactcaagtgctagcttcattgcct 191  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  17792675 tcacagtctctttcaattcaagtgctagcttcattgcct 17792713  T

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Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 17794606 - 17794644
Alignment:
Q  153 tcacagtctctttcaactcaagtgctagcttcattgcct 191  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  17794606 tcacagtctctttcaattcaagtgctagcttcattgcct 17794644  T

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Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 153 - 191
Target Start/End: Original strand, 17798136 - 17798174
Alignment:
Q  153 tcacagtctctttcaactcaagtgctagcttcattgcct 191  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  17798136 tcacagtctctttcaattcaagtgctagcttcattgcct 17798174  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 17796371 - 17796408
Alignment:
Q  153 tcacagtctctttcaactcaagtgctagcttcattgcc 190  Q
    |||||||||||||||| |||||||||||||||||||||    
T  17796371 tcacagtctctttcaattcaagtgctagcttcattgcc 17796408  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 39153215 - 39153158
Alignment:
Q  88 caattcataactagacaaaaccagcagaaaacccagaaccaccaaagaatcttcagta 145  Q
    |||| ||||| | ||||||||||| |||||||| |||||||||||||||| |||||||    
T  39153215 caatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaattttcagta 39153158  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 44895133 - 44895190
Alignment:
Q  88 caattcataactagacaaaaccagcagaaaacccagaaccaccaaagaatcttcagta 145  Q
    |||| ||||| | ||||||| ||| |||||||| |||||||||||||||| |||||||    
T  44895133 caatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagta 44895190  T

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