View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_high_18 (Length: 351)
Name: NF15945_high_18
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 6 - 336
Target Start/End: Complemental strand, 3994603 - 3994273
Alignment:
| Q |
6 |
cacagaaacatttgtaaaagtaaaaatgagaggcaattgaaatgttaaaattgcgataccttgacaattcacatcgagtgtctgatatccacaaacataa |
105 |
Q |
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| T |
3994603 |
cacagaaacatttgtaaaagtaaaaatgagaggcaattgaaatgttaaaattgcgataccttgacaattcacatcgagtgtctgatatccacaaacataa |
3994504 |
T |
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| Q |
106 |
actttatttgtagcttacgttaagaaatataatnnnnnnntctattaacaaaaagatcaatgaatatttctcatttatttgagatatatcaaaatactca |
205 |
Q |
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| T |
3994503 |
actttatttgtagcttacgttaagaaatataataaaaaaatctattaacaaaaagatcaatgaatatttctcatttatttgagatatatcaaaatactca |
3994404 |
T |
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| Q |
206 |
tgtaaatataagtgaaacccgatcaaaatttcaggggtttaataaactttagttaatgacgattgtgatgtgtgaagtgtgagttgaaatctcgtatcga |
305 |
Q |
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| T |
3994403 |
tgtaaatataagtgaaacccgatcaaaatttcaggaggttaataaactttagttaatgacgattgtgatatgtcaagtgtgagttgaaatctcgtatcga |
3994304 |
T |
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| Q |
306 |
atggaagagttgagtgtagatctgatgtata |
336 |
Q |
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| T |
3994303 |
atggaagagttgagtgtagatatgatgtata |
3994273 |
T |
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