View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_high_20 (Length: 344)
Name: NF15945_high_20
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_high_20 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 43 - 344
Target Start/End: Original strand, 38151251 - 38151552
Alignment:
| Q |
43 |
ttataaatgaaacaggccaacataaatatccttgctatagcacaaggttgctctgagtacaatgttactgttgttcttaagcgagaggattctataaagg |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38151251 |
ttataaatgaaacaggccaacataaatatccttgctatagcacaaggttgctctgagtacaatgttactgttgttcttaagcgagaggattctataaagg |
38151350 |
T |
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| Q |
143 |
ctctgcgggctgtccattccagattttataactcacaaaccacaatggcaatgggcataattggacctggattaattgggagcacactacttgatcagct |
242 |
Q |
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| T |
38151351 |
ctctgcgggctgtccattccagattttataactcacaaaccacaatggcaatgggcataattggacctggattaattgggagcacactacttgatcagct |
38151450 |
T |
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| Q |
243 |
aagggatcaggtacaatttctgtttataagtctctgtgtatgccttccgtgcttctttcagcgatttcaagtattataaattggttacagtttcataatt |
342 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38151451 |
aagggatcaggtacaatttctgtttataagtctctgtgtatgccttccgtgcttctttcagtgatttcaagtattataaattggttacagtttcataatt |
38151550 |
T |
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| Q |
343 |
tt |
344 |
Q |
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|| |
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| T |
38151551 |
tt |
38151552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 38151187 - 38151229
Alignment:
| Q |
1 |
ttttgatatgttgttgttttcatttgtttatttattcatttgt |
43 |
Q |
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| T |
38151187 |
ttttgatatgttggtgttttcatttgtttatttattcatttgt |
38151229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 52 - 254
Target Start/End: Complemental strand, 35095314 - 35095112
Alignment:
| Q |
52 |
aaacaggccaacataaatatccttgctatagcacaaggttgctctgagtacaatgttactgttgttcttaagcgagaggattctataaaggctctgcggg |
151 |
Q |
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||||||||||| |||||| ||| ||| |||||||||||||| |||||||| ||| ||||||||||| |||||||||||||| |||||| ||| | |||| |
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| T |
35095314 |
aaacaggccaatataaatgtccgtgccatagcacaaggttgttctgagtataatattactgttgttattaagcgagaggatagtataaaagctttacggg |
35095215 |
T |
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| Q |
152 |
ctgtccattccagattttataactcacaaaccacaatggcaatgggcataattggacctggattaattgggagcacactacttgatcagctaagggatca |
251 |
Q |
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|||||||||||||||||||| |||| |||||| || |||||||| || |||||||| ||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
35095214 |
ctgtccattccagattttatctctcaagaaccaccatagcaatgggaattattggaccaggattaattgggagcacgctacttgatcaactaagggatca |
35095115 |
T |
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| Q |
252 |
ggt |
254 |
Q |
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||| |
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| T |
35095114 |
ggt |
35095112 |
T |
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