View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_high_35 (Length: 224)
Name: NF15945_high_35
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 2 - 208
Target Start/End: Complemental strand, 44856357 - 44856147
Alignment:
| Q |
2 |
caccttttaaaacgtggagaagtagaaaatctggagttcgaactccgatccctactc----tatctgtgatagttaccaactgagctgcgcttactgaac |
97 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||| ||||| |||| |
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| T |
44856357 |
caccttttaaaatgtggagaagtagaaaatctggagttcgaactccgatccctgcagataatatctgtgatagctaccaactgagctgcacttacggaac |
44856258 |
T |
|
| Q |
98 |
aatcaaatatcttccttaattagtgtgaaagtaggtaattttgcttatccttaagtctgaatgatgttttgttgagcaaatcgcaatgaagttcaaatga |
197 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
44856257 |
aatcaaatatcatccttaattagtgtgaaagtaggtaattttgcttatccttaagtatgaatgatgttttgttgagcaaatcgcaatgaaggtcaaatga |
44856158 |
T |
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| Q |
198 |
attttattggt |
208 |
Q |
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||||||||||| |
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| T |
44856157 |
attttattggt |
44856147 |
T |
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