View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_high_6 (Length: 459)
Name: NF15945_high_6
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 22 - 441
Target Start/End: Original strand, 3300169 - 3300569
Alignment:
| Q |
22 |
atagagaattttatcatcccaacgtgtgacaccactctcctatagatataaacacacaaaaccattttcttaaaaccttctttgaaagacaaaaaatatt |
121 |
Q |
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| T |
3300169 |
atagagaattttatcatcccaacgtgtgacaccactctcctatagatataaacacacaaaaccattttcttaaaaccttctttgaaagacaaaaaatatt |
3300268 |
T |
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| Q |
122 |
acattctgccacttgctttctacttcagtgtctcttctttctctaaacccagtatcaaaagtttttacctttccaaccattttcatcatcacatcccatc |
221 |
Q |
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| T |
3300269 |
acattctgccacttgctttctacttcagtgtctcttctttctctaaacccagtatcaaaagtttttacctttccaaccattttcatcatcacatcccatc |
3300368 |
T |
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| Q |
222 |
ccctacacgatatacagtgttgttgtttcccctctctcatttatttattattagaaagttttcaaccttttgtttttctcattataaatacccattgagg |
321 |
Q |
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| T |
3300369 |
ccctacacgatatacagtgttgttgtttc---------------tcattattagaaagttttcaaccttttgtttttctcattataaatacccattgagg |
3300453 |
T |
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| Q |
322 |
aaaattcttaaagattataactaactttccttcttttttggccaagtttcaagctttgtgaaaatgggtttgttagagaatttggaatgggtgaatgttt |
421 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3300454 |
aaaattcttaaagatta----taactttccttcttttttggccaagtttcaagctttgtgaaaatgggtttgttggagaatttggaatgggtgaatgttt |
3300549 |
T |
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| Q |
422 |
atggaaagaagcgttgtagg |
441 |
Q |
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| T |
3300550 |
atggaaagaagcgttgtagg |
3300569 |
T |
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