View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_high_9 (Length: 433)
Name: NF15945_high_9
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_high_9 |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Original strand, 14740601 - 14741033
Alignment:
| Q |
1 |
cccaagttctaaaaacaacttattcaatgaagggaaagctgataaacagttgggtaacacaaatatcgtatctagatattttttatcatctattgaaagt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740601 |
cccaagttctaaaaacaacttattcaatgaagggaaagctgataaacagttgggtaacacaaatatcgtatctagatattttttatcatctattgaaagt |
14740700 |
T |
|
| Q |
101 |
tgaaggtcacgcacactgtgcttcgctgcagaagatactaaagaagtaaatttgttaacatcaacagtaattttaagtatttcaatgcaaagcctttcta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740701 |
tgaaggtcacgcacactgtgcttcgctgcagaagatactaaagtagtaaatttgttaacatcaacagtaattttaagtatttcaatgcaaagcctttcta |
14740800 |
T |
|
| Q |
201 |
tgtgattggatttgtgtagtagtctttccacaagatctaagaggcagttagctgagtcctcatttttaaattcaaagaggataaggaattttaaattcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740801 |
tgtgattggatttgtgtagtagtctttccacaagatctaagaggcagttagctgagtcctcatttttaaattcaaagaggataaggaattttaaattcaa |
14740900 |
T |
|
| Q |
301 |
agacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740901 |
agacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaat |
14741000 |
T |
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| Q |
401 |
ggcatcaggcatgttgcttatcatatctttcat |
433 |
Q |
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| T |
14741001 |
ggcatcaggcatgttgcttatcatatctttcat |
14741033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 399
Target Start/End: Original strand, 14729368 - 14729470
Alignment:
| Q |
297 |
tcaaagacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaa |
396 |
Q |
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||||||| ||||| || |||||||||||| ||||||||| | |||||| |||||||| || || ||||| || | ||||||||||||||||| | ||| |
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| T |
14729368 |
tcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaa |
14729467 |
T |
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| Q |
397 |
gaa |
399 |
Q |
| |
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||| |
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| T |
14729468 |
gaa |
14729470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 17585602 - 17585163
Alignment:
| Q |
1 |
cccaagttctaaaaacaacttattcaatgaagggaaagctgataaacagttgggtaacacaaatatcgtatctagatattttttatcatctattgaaagt |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17585602 |
cccaagttgtaaaaacaacttattcaatgaagggaaaactgataaacagttgggtaacacaaatatcgtatctagatattttttatcatctattgaaagt |
17585503 |
T |
|
| Q |
101 |
tgaaggtcacgcacactgtgcttcgctgcagaagatactaaagaagtaaatttgttaacatcaacagtaattttaagtatttcaatgcaaagcctttcta |
200 |
Q |
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||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17585502 |
tgaagatcatgcacattgtgcttcgctgcagaagatactaaagaagtaactttgttagcatcaatagtaattttaagtatttcaatgcaaagcctttcta |
17585403 |
T |
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| Q |
201 |
tgtgattggatttgtgtagtagtctttccacaagatctaagaggcagttagctgagtcctcatttttaa-att-------caaagaggataaggaatttt |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||| ||||||||| ||||||||| |
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| T |
17585402 |
cgtgattggatttgtgtagtagtctttccacaagatctaagaggcagtta-ataagtcctcattttcaagatttgactcataaagaggatgaggaatttt |
17585304 |
T |
|
| Q |
293 |
aaattcaaagacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataa |
392 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17585303 |
aaattcaaagacagataattgagtccacgagtatctccactttggtgataagattgaagttctaaccgcctctttggttgagagtaaagaaagaatataa |
17585204 |
T |
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| Q |
393 |
tgaagaatggcatcaggcatgttgcttatcatatctttcat |
433 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
17585203 |
tgaagaatggcatcaggcatgttgcttatcatatctttcat |
17585163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 399
Target Start/End: Complemental strand, 17594119 - 17594017
Alignment:
| Q |
297 |
tcaaagacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaa |
396 |
Q |
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||||||| ||||| || |||||||||||| ||||||||| | |||||| |||||||| || || ||||| || | ||||||||||||||||| | ||| |
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| T |
17594119 |
tcaaagatggataaatgtgtccacaagtatttccactttgtagctaatatggaagttcttacagcatctttagtagggagtaaagaaagaatatgaagaa |
17594020 |
T |
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| Q |
397 |
gaa |
399 |
Q |
| |
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||| |
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| T |
17594019 |
gaa |
17594017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 433
Target Start/End: Original strand, 31219141 - 31219277
Alignment:
| Q |
297 |
tcaaagacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaa |
396 |
Q |
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|||||||| | |||||| |||||||||||||||||||||| || |||||| |||||||| || ||||||| || ||||| |||||||||||||| || |
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| T |
31219141 |
tcaaagacgggtaattgggtccacaagtatctccactttgttgctaatatagaagttcttacagcctcttccgtagagaggcgagaaagaatataataaa |
31219240 |
T |
|
| Q |
397 |
gaatggcatcaggcatgttgcttatcatatctttcat |
433 |
Q |
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|||| | ||||| | | ||| |||||||||||||| |
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| T |
31219241 |
gaattccctcaggtaaatcgctaatcatatctttcat |
31219277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 11062643 - 11062578
Alignment:
| Q |
1 |
cccaagttctaaaaacaacttattcaatgaagggaaagctgataaacagttgggtaacacaaatatc |
67 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||||| |||| | |||||||||||||||| |
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| T |
11062643 |
cccaagttgtaaaaacaacttattcaatgaacggaaagctga-caacaatcgggtaacacaaatatc |
11062578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 54220237 - 54220279
Alignment:
| Q |
184 |
aatgcaaagcctttctatgtgattggatttgtgtagtagtctt |
226 |
Q |
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| T |
54220237 |
aatgcagagcctttctatgtgattagatttgtgaagtagtctt |
54220279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 401
Target Start/End: Original strand, 40451659 - 40451759
Alignment:
| Q |
301 |
agacagataattgagtccacaagtatctccactttggtgataatattgaagttctaaccgcctctttggttgagagtaaagaaagaatataatgaagaat |
400 |
Q |
| |
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|||| |||||||| ||||||||||| |||||||||| || |||||| || ||| | || || || ||||| ||||| || |||||||||| |||||||| |
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| T |
40451659 |
agacggataattgggtccacaagtacctccactttgttgctaatatggatgttttgacagcatccttggtggagagaaatgaaagaatatggtgaagaat |
40451758 |
T |
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| Q |
401 |
g |
401 |
Q |
| |
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| |
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| T |
40451759 |
g |
40451759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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