View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_1 (Length: 740)
Name: NF15945_low_1
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 730; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 1 - 730
Target Start/End: Original strand, 50718004 - 50718733
Alignment:
| Q |
1 |
caagtcctacacatcaaccctatggtttcccaccaaaataagtagatacgtagagcttcatctcatcatggcaagttgcattattttcatagccatggaa |
100 |
Q |
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| T |
50718004 |
caagtcctacacatcaaccctatggtttcccaccaaaataagtagatacgtagagcttcatctcatcatggcaagttgcattattttcatagccatggaa |
50718103 |
T |
|
| Q |
101 |
ctcttcatagctcctcttcatcaccaaccatttgaccctaatgatggtaccattccctccaaccatctccataactttgaacactcttccatggctttgt |
200 |
Q |
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| T |
50718104 |
ctcttcatagctcctcttcatcaccaaccatttgaccctaatgatggtaccattccctccaaccatctccataactttgaacactcttccatggctttgt |
50718203 |
T |
|
| Q |
201 |
ctttcttagtctatgctacatttgccatgattcttgatagaaaatcaacaagtactaaaagtcaaaatgaaattacccatttgctagcagcaatagcatt |
300 |
Q |
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| T |
50718204 |
ctttcttagtctatgctacatttgccatgattcttgatagaaaatcaacaagtactaaaagtcaaaatgaaattacccatttgctagcagcaatagcatt |
50718303 |
T |
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| Q |
301 |
tgcacaacaatttcttcttattcatctccattcaagggatcacatgggtatagaaggacaatatcattatttactacaagttttgatttcgatttgtttt |
400 |
Q |
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| T |
50718304 |
tgcacaacaatttcttcttattcatctccattcaagggatcacatgggtatagaaggacaatatcattatttactacaagttttgatttcgatttgtttt |
50718403 |
T |
|
| Q |
401 |
gtgacaacccttatgggaattggttatccaatgagcttcttggtgagttttgtgcgatctgttagcataaccttccaaggtttgtggcttatgttcatgg |
500 |
Q |
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| T |
50718404 |
gtgacaacccttatgggaattggttatccaatgagcttcttggtgagttttgtgcgatctgttagcataaccttccaaggtttgtggcttatgttcatgg |
50718503 |
T |
|
| Q |
501 |
ggctcatgctttttacacctggttttgaaccgaaaggttgctttacgaaacttgagggagatcaatatgttgttaagtgcagtgatgaaaaggctcttca |
600 |
Q |
| |
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| T |
50718504 |
ggctcatgctttttacacctggttttgaaccgaaaggttgctttacgaaacttgagggagatcaatatgttgttaagtgcagtgatgaaaaggctcttca |
50718603 |
T |
|
| Q |
601 |
tcgtgctgtttcattggtgaatcttcaattcagctggttcttgattggagtcactgtttttgctgtgtctttctacttgattatggctataagttatggc |
700 |
Q |
| |
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| T |
50718604 |
tcgtgctgtttcattggtgaatcttcaattcagctggttcttgattggagtcactgtttttgctgtgtctttctacttgattatggctataagttatggc |
50718703 |
T |
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| Q |
701 |
gaaaaagtaaagtatgtttcactgatgatg |
730 |
Q |
| |
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| T |
50718704 |
gaaaaagtaaagtatgtttcactgatgatg |
50718733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 144 - 728
Target Start/End: Original strand, 50712860 - 50713450
Alignment:
| Q |
144 |
atggtaccattccctccaaccatctccataactttgaacactcttccatggctttgtctttcttagtctatgctacatttgccatgattcttgatagaaa |
243 |
Q |
| |
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|||| |||||||| |||||||| |||| | |||||||| ||||||| |||||||||||||| | |||||||| |||||||| |||||||||| ||| |
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| T |
50712860 |
atggaaccattcctaccaaccatatccaccaagttgaacacacttccataactttgtctttcttaatatatgctacctttgccataattcttgatacaaa |
50712959 |
T |
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| Q |
244 |
a---tcaacaagtact---aaaagtcaaaatgaaattacccatttgctagcagcaatagcatttgcacaacaatttcttcttattcatctccattcaagg |
337 |
Q |
| |
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| T |
50712960 |
aaaatcaactattactgaaaaaactcaatatgaaattacccttttgctagcagctatagcatttggacaagaatttcttcttttccatcttcattcaaga |
50713059 |
T |
|
| Q |
338 |
gatcacatgggtatagaaggacaatatcattatttactacaagttttgatttcgatttgttttgtgacaacccttatgggaattggttatccaatgagct |
437 |
Q |
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| T |
50713060 |
agtcacatggggatagaaggacaataccattattgtttgcaagttttgattatgataggtttttttacaacccttatgggaattggttttccaaagagtt |
50713159 |
T |
|
| Q |
438 |
tcttggtgagttttgtgcgatctgttagcataaccttccaaggtttgtggcttatgttcatggggctcatgctttttacacctggttttgaaccgaaagg |
537 |
Q |
| |
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| ||||| ||||| | || ||||||||||| | |||||||||||||| ||||||||||||| | |||||| || |||||||| | |||| ||||| |
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| T |
50713160 |
ttttggtatgttttcttcgttctgttagcatgatcttccaaggtttgttcattatgttcatgggtttagtgctttctagacctggttatcaacccaaagg |
50713259 |
T |
|
| Q |
538 |
ttgctttacgaaacttgagggagatcaatatgttgttaagtgcagtgatgaaaaggctcttcatcgtgctgtttcattggtgaatcttcaattcagctgg |
637 |
Q |
| |
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| T |
50713260 |
ttgcttcttggaatatgaaggggatcaacttatgattaggtgcaatgatgaaaaggctatgcatcgtgctatttcattggtgaatcttcaattcagctgg |
50713359 |
T |
|
| Q |
638 |
ttcttgattggagtcactgtttttgctgtgtctttctacttgattatggctataagttatggcgaaaaagtaaagtatgtttcactgatga |
728 |
Q |
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| T |
50713360 |
ttctttattggaatcactatttttgtagtgtctttctacttgattatggctataatttatggtgaaaaagtggagtgtgattcactgatga |
50713450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 79
Target Start/End: Original strand, 50712763 - 50712819
Alignment:
| Q |
23 |
tggtttcccaccaaaataagtagatacgtagagcttcatctcatcatggcaagttgc |
79 |
Q |
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||||||||||||||||| ||||||||| |||||||| || |||| ||||||||||| |
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| T |
50712763 |
tggtttcccaccaaaattagtagatacttagagctttatttcattgtggcaagttgc |
50712819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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