View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15945_low_10 (Length: 437)

Name: NF15945_low_10
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15945_low_10
NF15945_low_10
[»] chr4 (28 HSPs)
chr4 (37-354)||(4105835-4106140)
chr4 (253-320)||(24235317-24235384)
chr4 (1-52)||(4105675-4105726)
chr4 (254-320)||(3222987-3223053)
chr4 (48-82)||(4105640-4105674)
chr4 (254-316)||(31221411-31221473)
chr4 (255-320)||(43168721-43168786)
chr4 (256-320)||(4100762-4100826)
chr4 (253-317)||(9162063-9162127)
chr4 (256-320)||(55996422-55996486)
chr4 (256-319)||(7037492-7037555)
chr4 (254-320)||(5208334-5208400)
chr4 (255-321)||(24209793-24209859)
chr4 (254-320)||(44368209-44368275)
chr4 (250-320)||(46566923-46566993)
chr4 (254-320)||(51389314-51389380)
chr4 (259-320)||(925069-925130)
chr4 (255-320)||(31318752-31318817)
chr4 (255-320)||(34116547-34116612)
chr4 (255-320)||(40847369-40847434)
chr4 (255-320)||(53781844-53781908)
chr4 (248-319)||(4915680-4915752)
chr4 (256-320)||(8680941-8681005)
chr4 (256-316)||(9032780-9032840)
chr4 (254-314)||(23094374-23094434)
chr4 (256-320)||(33438045-33438109)
chr4 (256-320)||(42178057-42178121)
chr4 (256-320)||(52456934-52456997)
[»] chr7 (24 HSPs)
chr7 (249-320)||(4971283-4971354)
chr7 (254-320)||(43255574-43255640)
chr7 (254-319)||(24700119-24700184)
chr7 (256-320)||(3247069-3247133)
chr7 (255-319)||(9031204-9031268)
chr7 (256-320)||(33050183-33050247)
chr7 (252-320)||(44511135-44511203)
chr7 (257-320)||(37325826-37325889)
chr7 (254-320)||(18157192-18157258)
chr7 (255-320)||(33180716-33180782)
chr7 (254-320)||(38023431-38023497)
chr7 (255-320)||(19426579-19426644)
chr7 (255-316)||(22692083-22692144)
chr7 (255-320)||(27164844-27164909)
chr7 (267-320)||(29034112-29034165)
chr7 (254-319)||(32933546-32933610)
chr7 (259-320)||(34304685-34304746)
chr7 (244-320)||(1709273-1709348)
chr7 (256-320)||(2347066-2347130)
chr7 (256-320)||(20406541-20406605)
chr7 (256-320)||(28081789-28081853)
chr7 (248-320)||(28548228-28548300)
chr7 (254-318)||(30864426-30864490)
chr7 (256-320)||(44175545-44175609)
[»] chr2 (17 HSPs)
chr2 (250-320)||(35171233-35171303)
chr2 (254-320)||(15283257-15283323)
chr2 (254-320)||(27307238-27307304)
chr2 (254-320)||(34144558-34144624)
chr2 (254-320)||(5167747-5167815)
chr2 (255-320)||(10687940-10688005)
chr2 (247-320)||(29168716-29168789)
chr2 (255-320)||(44484663-44484728)
chr2 (256-320)||(3196094-3196158)
chr2 (256-316)||(21805797-21805857)
chr2 (256-320)||(28165129-28165193)
chr2 (246-320)||(33296078-33296152)
chr2 (255-320)||(3959893-3959958)
chr2 (255-320)||(30192358-30192423)
chr2 (255-320)||(36383461-36383526)
chr2 (257-318)||(38246760-38246821)
chr2 (256-320)||(30856807-30856871)
[»] chr1 (26 HSPs)
chr1 (254-320)||(41885719-41885785)
chr1 (255-320)||(34941927-34941992)
chr1 (251-320)||(36669377-36669446)
chr1 (256-320)||(25995460-25995524)
chr1 (256-320)||(32821635-32821699)
chr1 (256-320)||(50528064-50528128)
chr1 (257-320)||(36231713-36231776)
chr1 (255-318)||(49645361-49645424)
chr1 (254-320)||(18610771-18610837)
chr1 (254-320)||(42256458-42256524)
chr1 (252-318)||(43755687-43755753)
chr1 (254-320)||(44672037-44672103)
chr1 (254-315)||(835869-835930)
chr1 (259-320)||(25130706-25130767)
chr1 (255-320)||(25988991-25989056)
chr1 (255-320)||(27563483-27563548)
chr1 (255-320)||(30530581-30530646)
chr1 (252-320)||(1100213-1100281)
chr1 (257-320)||(4604532-4604593)
chr1 (254-314)||(9011643-9011703)
chr1 (256-320)||(16658438-16658502)
chr1 (256-320)||(29254073-29254137)
chr1 (256-320)||(40118722-40118786)
chr1 (256-320)||(40238438-40238502)
chr1 (256-320)||(45350102-45350166)
chr1 (256-320)||(49621363-49621427)
[»] chr8 (18 HSPs)
chr8 (255-320)||(36064029-36064094)
chr8 (256-320)||(37568621-37568685)
chr8 (257-320)||(6806909-6806972)
chr8 (255-320)||(42443103-42443168)
chr8 (256-320)||(41406863-41406927)
chr8 (255-318)||(30927940-30928003)
chr8 (253-320)||(41273512-41273579)
chr8 (254-320)||(6004942-6005008)
chr8 (250-316)||(8841024-8841090)
chr8 (254-320)||(12045660-12045726)
chr8 (250-316)||(28156197-28156263)
chr8 (254-320)||(32725787-32725853)
chr8 (254-320)||(34473947-34474013)
chr8 (258-320)||(43186298-43186360)
chr8 (254-320)||(44380621-44380687)
chr8 (257-317)||(17492530-17492590)
chr8 (248-317)||(33817148-33817217)
chr8 (256-320)||(43873698-43873762)
[»] chr5 (15 HSPs)
chr5 (256-320)||(27440479-27440543)
chr5 (258-320)||(35972576-35972638)
chr5 (256-320)||(38010872-38010936)
chr5 (254-318)||(38500941-38501005)
chr5 (253-320)||(32634705-32634772)
chr5 (254-320)||(12401190-12401256)
chr5 (255-320)||(9594477-9594542)
chr5 (256-320)||(3263515-3263579)
chr5 (256-320)||(9599735-9599799)
chr5 (256-320)||(16553504-16553568)
chr5 (256-320)||(17063865-17063929)
chr5 (264-320)||(28501625-28501681)
chr5 (256-320)||(28903991-28904055)
chr5 (256-320)||(28940386-28940450)
chr5 (256-320)||(30574384-30574448)
[»] chr3 (26 HSPs)
chr3 (254-318)||(35376560-35376624)
chr3 (252-320)||(53102909-53102977)
chr3 (257-320)||(40419649-40419712)
chr3 (247-320)||(1901933-1902006)
chr3 (247-320)||(1911379-1911452)
chr3 (252-320)||(108427-108495)
chr3 (256-320)||(11327108-11327172)
chr3 (254-317)||(20215946-20216009)
chr3 (255-318)||(34607929-34607992)
chr3 (245-320)||(42755644-42755719)
chr3 (254-320)||(7221-7287)
chr3 (254-320)||(7867718-7867784)
chr3 (254-320)||(8254025-8254091)
chr3 (254-320)||(9159043-9159109)
chr3 (254-320)||(36818954-36819020)
chr3 (254-320)||(49196694-49196760)
chr3 (254-320)||(53932398-53932464)
chr3 (255-320)||(32931925-32931990)
chr3 (255-320)||(36869844-36869909)
chr3 (255-320)||(38944148-38944213)
chr3 (254-318)||(27198169-27198233)
chr3 (256-320)||(29525233-29525297)
chr3 (252-320)||(38471638-38471706)
chr3 (256-320)||(41309000-41309064)
chr3 (256-320)||(48205045-48205109)
chr3 (253-320)||(48405407-48405475)
[»] chr6 (13 HSPs)
chr6 (254-320)||(3339506-3339572)
chr6 (254-320)||(17417242-17417308)
chr6 (254-320)||(30796082-30796148)
chr6 (254-320)||(32729887-32729953)
chr6 (256-320)||(25554245-25554309)
chr6 (256-320)||(25995442-25995506)
chr6 (253-320)||(3088970-3089037)
chr6 (254-320)||(15722510-15722576)
chr6 (254-320)||(31934164-31934230)
chr6 (247-320)||(11017374-11017447)
chr6 (259-320)||(34490350-34490411)
chr6 (256-320)||(26094905-26094969)
chr6 (252-320)||(28965847-28965915)
[»] scaffold0154 (1 HSPs)
scaffold0154 (255-317)||(9858-9920)
[»] scaffold0651 (1 HSPs)
scaffold0651 (255-320)||(4853-4918)
[»] scaffold0184 (1 HSPs)
scaffold0184 (256-320)||(16601-16665)
[»] scaffold0078 (1 HSPs)
scaffold0078 (256-320)||(56179-56243)


Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-128; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 37 - 354
Target Start/End: Original strand, 4105835 - 4106140
Alignment:
Q  37 aataatgagttgaatttattatttattttgagaccaataacacaatcatataaaatataaattgatattgatcctaatagtcaagctagccgttgtgttg 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  4105835 aataatgagttgaatttattatttattttgagaccaataacacaatcatataaattataaattgatattgatcctaatagtcaagctagccattgtgttg 4105934  T
Q  137 tgggcacaagcgcactacaggtagagctaagcctaaacctaagctccatccttgagtgggtgtgaaatgcctcttgcacaagtatttaacgatgaaataa 236  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||    
T  4105935 tgggcacaagtgcagtacaggtagagctaagcctaaacctaagctccatccttgagtgggtgtgaaatgtctcttgcacaagtatataacaatgaaataa 4106034  T
Q  237 aagtaagaaataaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcacacaaaagacaagcagtt 336  Q
    ||||||||||||||||||||||||||||| ||||||||||            |||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  4106035 aagtaagaaataaaaataagagaaatgatatttgtacaat------------ttttttttacaattttctctctcatactcacacaaaagacaaacagtt 4106122  T
Q  337 gtgtgtattctttatgaa 354  Q
    ||||||||||||||||||    
T  4106123 gtgtgtattctttatgaa 4106140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 24235317 - 24235384
Alignment:
Q  253 taagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||||| ||||||||||||  |||||||| ||||| ||||| ||||||| |||||||||||    
T  24235317 taagagaaatgatatttgtacaatcaatttgtgacaatttttgtacaactttctctctcatactcaca 24235384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 4105675 - 4105726
Alignment:
Q  1 attacgccgactgcattcttcatgaatatggtaaataataatgagttgaatt 52  Q
    ||||||||| ||| ||||||||||||||||||||||| ||||| ||||||||    
T  4105675 attacgccggctgtattcttcatgaatatggtaaatactaatgggttgaatt 4105726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 3222987 - 3223053
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||||||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  3222987 aagagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctcatactcaca 3223053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Original strand, 4105640 - 4105674
Alignment:
Q  48 gaatttattatttattttgagaccaataacacaat 82  Q
    |||||||||||||||||||||||||||||||||||    
T  4105640 gaatttattatttattttgagaccaataacacaat 4105674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 316
Target Start/End: Original strand, 31221411 - 31221473
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatact 316  Q
    |||||||||||| ||||||||||||  ||||||||  |||||||||| ||||||| |||||||    
T  31221411 aagagaaatgatatttgtacaatcaatttgtgacaacttttatacaactttctctctcatact 31221473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 43168786 - 43168721
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||| |||||||| ||||| | ||| ||||||| |||||||||||    
T  43168786 agagaaatgatatttgtacaaccattttgtgacaatttttttgcaactttctctatcatactcaca 43168721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 4100826 - 4100762
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||| ||| ||| ||||||||  |||| ||||||||||||| |||||||||||    
T  4100826 gagaaatgatatttgttcaaccattttgtgacaccttttgtacaattttctctctcatactcaca 4100762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 9162063 - 9162127
Alignment:
Q  253 taagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactc 317  Q
    ||||||||||||| ||||||||||||| ||||||||  ||||  |||||||||||| | ||||||    
T  9162063 taagagaaatgatatttgtacaatcattttgtgacaactttttgacaattttctctctaatactc 9162127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 55996422 - 55996486
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||| || | ||| |||||  |||||||||||| |||||||||||    
T  55996422 gagaaatgatatttgtacaatcattttctaacaattttttgacaattttctctctcatactcaca 55996486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 7037555 - 7037492
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcac 319  Q
    |||||||||| ||||||||| ||  ||||||||  |||| ||||||||||||| ||||||||||    
T  7037555 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaattttctctctcatactcac 7037492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 5208400 - 5208334
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  5208400 aagagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcatactcaca 5208334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 24209859 - 24209793
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcacac 321  Q
    ||||||||||| ||| ||| | ||  |||||||| |||||| |||||||||||| ||||||||||||    
T  24209859 agagaaatgatatttatacgaccactttgtgacaatttttagacaattttctctctcatactcacac 24209793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 44368275 - 44368209
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||||||  ||||||||  |||| ||||| ||||||| | |||||||||    
T  44368275 aagagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctcttatactcaca 44368209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 320
Target Start/End: Original strand, 46566923 - 46566993
Alignment:
Q  250 aaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||||||| ||||||||  ||  ||||||||  ||||| |||| ||||||| |||||||||||    
T  46566923 aaataagagaaatgatatttgtacatccactttgtgacaacttttagacaactttctctctcatactcaca 46566993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 51389314 - 51389380
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||||||| | || ||| |||||  |||| ||||||| |||||||||||    
T  51389314 aagagaaatgatatttgtacaatcatttagtaacaattttttgacaactttctctttcatactcaca 51389380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 925130 - 925069
Alignment:
Q  259 aaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||| ||| ||||| ||| ||||||||  ||||| |||||||||||| |||||||||||    
T  925130 aaatgatatttatacaaccattttgtgacaacttttagacaattttctctctcatactcaca 925069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 31318752 - 31318817
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||| |||  ||| ||||| ||||| ||||||| |||||||||||    
T  31318752 agagaaatgatatttgtacaaccattttggtacaatttttgtacaactttctctctcatactcaca 31318817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 34116612 - 34116547
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||  ||||||||  ||||  |||||||||||| |||||||||||    
T  34116612 agagaaatgatatttgtacaaccactttgtgacaactttttgacaattttctctctcatactcaca 34116547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 40847369 - 40847434
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||| || |||||||||| || |||| ||| |||||| || ||||||||| |||||||||||    
T  40847369 agagaaattatatttgtacaattattttgtaacaatttttagaccattttctctctcatactcaca 40847434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 53781908 - 53781844
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| |||||||||  || |||| |||  |||||||||||||||||| |||||||||||    
T  53781908 agagaaatgatatttgtacaactattttgt-acaacttttatacaattttctctttcatactcaca 53781844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 319
Target Start/End: Complemental strand, 4915752 - 4915680
Alignment:
Q  248 aaaaataagagaaatgatttttgtacaatcatcttgtgacattttttat-acaattttctctgtcatactcac 319  Q
    |||| ||||||||||||| |||| |||  ||| |||||||| ||||||| |||| ||||||| ||||||||||    
T  4915752 aaaattaagagaaatgatatttgaacatccattttgtgacaatttttatgacaactttctctctcatactcac 4915680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 8680941 - 8681005
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| |||  ||||| |||||||  |||| ||||||| |||||||||||    
T  8680941 gagaaatgatatttgtacaaccattatgtgatattttttggacaactttctctctcatactcaca 8681005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 9032780 - 9032840
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatact 316  Q
    |||||||||| ||||||||||||  ||||||||  |||| ||||| ||||||| |||||||    
T  9032780 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctcatact 9032840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 23094374 - 23094434
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcata 314  Q
    |||||||||||| ||||||||||||| |||||| |  ||||| |||| ||||||| |||||    
T  23094374 aagagaaatgatatttgtacaatcattttgtgataacttttagacaactttctctttcata 23094434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 33438045 - 33438109
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| |||||| || ||  |||||||| |||||| | |||||||||| |||||||||||    
T  33438045 gagaaatgatatttgtaaaaccaatttgtgacaatttttagataattttctctctcatactcaca 33438109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 42178121 - 42178057
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| |||||||||||||  ||||||| |||||  | |||||||||| |||| ||||||    
T  42178121 gagaaatgatatttgtacaatcattatgtgacaatttttgaataattttctctctcatgctcaca 42178057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 52456997 - 52456934
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| |||||||||| || || |||||  ||||| |||||||||||| |||||||||||    
T  52456997 gagaaatgatatttgtacaat-attttttgacaacttttagacaattttctctctcatactcaca 52456934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 7e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 320
Target Start/End: Original strand, 4971283 - 4971354
Alignment:
Q  249 aaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||||||||| ||||||||| ||| ||||||||  |||||||||| ||||||| |||||||||||    
T  4971283 aaaataagagaaatgatatttgtacaaccattttgtgacaacttttatacaactttctctctcatactcaca 4971354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 43255640 - 43255574
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||| |||||| |||||||||| || |||||||| ||||| ||||||||||| | |||||||||||    
T  43255640 aagagtaatgatatttgtacaattattttgtgacaatttttgtacaattttctttctcatactcaca 43255574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 24700119 - 24700184
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcac 319  Q
    |||||||||||| ||||||||||||| |||| |||  |||| ||||| ||||||| ||||||||||    
T  24700119 aagagaaatgatatttgtacaatcattttgtaacaacttttttacaactttctctatcatactcac 24700184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 3247069 - 3247133
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||| | |||||| |||||  |||||||||| | |||||||||||    
T  3247069 gagaaatgatatttgtacaatcatttagtgacaattttttgacaattttctatttcatactcaca 3247133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 319
Target Start/End: Original strand, 9031204 - 9031268
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcac 319  Q
    ||||||||||| ||||||||| ||| |||| ||| |||||| | |||||||||| ||||||||||    
T  9031204 agagaaatgatatttgtacaaacattttgttacaatttttagataattttctctctcatactcac 9031268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 33050183 - 33050247
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| ||||||||  |||| ||||| ||||||| |||||||||||    
T  33050183 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcaca 33050247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 44511135 - 44511203
Alignment:
Q  252 ataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||||| || |||||| ||| ||||||||  |||| ||||| ||||||| |||||||||||    
T  44511135 ataagagaaatgatattcgtacaaccattttgtgacaacttttgtacaactttctctttcatactcaca 44511203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 37325889 - 37325826
Alignment:
Q  257 agaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||| ||||||||| ||  ||||||||  |||| ||||||||||||| |||||||||||    
T  37325889 agaaatgatatttgtacaaccaatttgtgacaacttttgtacaattttctctttcatactcaca 37325826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 18157258 - 18157192
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||| ||||| ||||||||| ||  |||||| | |||||| |||||||||||| |||||||||||    
T  18157258 aagagacatgatatttgtacaaccactttgtgataatttttagacaattttctctctcatactcaca 18157192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 33180782 - 33180716
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttat-acaattttctctgtcatactcaca 320  Q
    ||||||||||| |||| ||| |||| ||||||||  |||||| |||||||||||| |||||||||||    
T  33180782 agagaaatgatatttgaacattcattttgtgacaacttttatgacaattttctctctcatactcaca 33180716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 38023497 - 38023431
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||  |||||| | |||||| |||| ||||||| |||||||||||    
T  38023497 aagagaaatgatatttgtacaaccactttgtgataatttttagacaactttctctctcatactcaca 38023431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 19426579 - 19426644
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||| ||||||||  ||||  |||| ||||||| |||||||||||    
T  19426579 agagaaatgatatttgtacaaccattttgtgacaactttttgacaactttctctctcatactcaca 19426644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 22692083 - 22692144
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatact 316  Q
    ||||||||||| ||||||||| ||| || |||||  ||||| |||||||||||| |||||||    
T  22692083 agagaaatgatatttgtacaaccattttatgacaacttttaaacaattttctctctcatact 22692144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 27164909 - 27164844
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||||||  ||||||||  |||| || || ||||||| |||||||||||    
T  27164909 agagaaatgatatttgtacaatcaatttgtgacaacttttgtataactttctctctcatactcaca 27164844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 320
Target Start/End: Original strand, 29034112 - 29034165
Alignment:
Q  267 tttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||||| |||||||| |||||  | |||||||||| |||||||||||    
T  29034112 tttgtacaatcattttgtgacaattttttgataattttctctctcatactcaca 29034165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 32933546 - 32933610
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcac 319  Q
    |||||||||||| |||||||||| || ||||||||  ||||  |||||||||||| ||||||||||    
T  32933546 aagagaaatgatatttgtacaattat-ttgtgacaaatttttgacaattttctctctcatactcac 32933610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Complemental strand, 34304746 - 34304685
Alignment:
Q  259 aaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||| |||||||||  || || ||||| |||||| |||||||||||| |||||||||||    
T  34304746 aaatgatatttgtacaactattttttgacaatttttagacaattttctctctcatactcaca 34304685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 320
Target Start/End: Original strand, 1709273 - 1709348
Alignment:
Q  244 aaataaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| |||||||||| | ||||||||||| ||   ||| ||||| |||||| |||||| |||||||||||    
T  1709273 aaataaaaata-gagaaatgatatctgtacaatcatttttgtacaatttttgtacaatattctctctcatactcaca 1709348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 2347130 - 2347066
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| ||||||||  |||  ||||| ||||||| |||||||||||    
T  2347130 gagaaatgatatttgtacaaccattttgtgacaactttggtacaactttctctctcatactcaca 2347066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 20406541 - 20406605
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||||||||||||  ||||  |||| ||||| | |||||||||||    
T  20406541 gagaaatgatatttgtacaaccatcttgtgacaactttttgacaactttctttctcatactcaca 20406605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 28081853 - 28081789
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| |||| | | ||||| ||||| ||||||| |||||||||||    
T  28081853 gagaaatgatatttgtacaaccattttgtaataatttttttacaactttctctctcatactcaca 28081789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 320
Target Start/End: Complemental strand, 28548300 - 28548228
Alignment:
Q  248 aaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||||||||| |||||||||  || |||  |||  |||| ||||| ||||||| |||||||||||    
T  28548300 aaaaataagagaaatgatatttgtacaactattttggtacaacttttgtacaactttctctctcatactcaca 28548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 30864490 - 30864426
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactca 318  Q
    |||||||||||| ||||||||| ||  ||||||||  |||| ||||| ||||||| |||||||||    
T  30864490 aagagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcatactca 30864426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 44175545 - 44175609
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||| || ||||||||||||| |||||| |  |||| ||||| ||||||| |||||||||||    
T  44175545 gagaaataatatttgtacaatcattttgtgataacttttgtacaactttctctctcatactcaca 44175609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 35171303 - 35171233
Alignment:
Q  250 aaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||||||| ||||||||| ||| |||||||| ||||  ||||| ||||||| |||||||||||    
T  35171303 aaataagagaaatgatatttgtacaaccattttgtgacaattttggtacaactttctctctcatactcaca 35171233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 15283323 - 15283257
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||  |||||||| |||||| |||| ||||||| |||||||||||    
T  15283323 aagagaaatgatatttgtacaaccactttgtgacaatttttagacaactttctctctcatactcaca 15283257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 27307304 - 27307238
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||||||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  27307304 aagagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctcatactcaca 27307238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 34144624 - 34144558
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||  |||||||| ||||| ||||| ||||||| |||||||||||    
T  34144624 aagagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctcatactcaca 34144558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 5167815 - 5167747
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgaca--ttttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||  ||||||||  ||||||| |||||||||||| |||||||||||    
T  5167815 aagagaaatgatatttgtacaaccactttgtgacaatttttttagacaattttctctctcatactcaca 5167747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 10687940 - 10688005
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||  ||||||||  |||||||||| ||||||| |||||||||||    
T  10687940 agagaaatgatatttgtacaaacaatttgtgacaacttttatacaactttctctctcatactcaca 10688005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 29168716 - 29168789
Alignment:
Q  247 taaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||||||||||| ||||||||| ||| || |||||  ||||  |||| ||||||| |||||||||||    
T  29168716 taaaaataagagaaatgatatttgtacaaccattttttgacaacttttgcacaactttctctctcatactcaca 29168789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 44484728 - 44484663
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||| |||| ||| ||||| ||||| ||||||| |||||||||||    
T  44484728 agagaaatgatatttgtacaaccattttgtaacaatttttgtacaactttctctctcatactcaca 44484663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 3196158 - 3196094
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  3196158 gagaaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctcatactcaca 3196094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 21805857 - 21805797
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatact 316  Q
    |||||||||| ||||||||||||| | ||||||  ||||| |||||||||||| |||||||    
T  21805857 gagaaatgatatttgtacaatcatttagtgacaacttttagacaattttctctctcatact 21805797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 28165129 - 28165193
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||  |||||||| ||| ||||||||  ||||| |||||||||||| |||||||||||    
T  28165129 gagaaatgatacttgtacaaccattttgtgacaacttttagacaattttctctctcatactcaca 28165193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 246 - 320
Target Start/End: Complemental strand, 33296152 - 33296078
Alignment:
Q  246 ataaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||||||||||| ||||||||| ||  ||||||||  ||||  |||| || |||| |||||||||||    
T  33296152 ataaaaataagagaaatgatatttgtacaaccactttgtgacaactttttgacaacttcctctatcatactcaca 33296078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 3959893 - 3959958
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| | | || |||||  ||||| |||||||||||| |||||||||||    
T  3959893 agagaaatgatatttgtacaacctttttttgacaacttttacacaattttctctctcatactcaca 3959958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 30192423 - 30192358
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||| ||||||| |||| | | |||||  |||||||||||| |||||||||||    
T  30192423 agagaaatgatatttgttcaatcattttgtaaaaatttttgaacaattttctctctcatactcaca 30192358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 36383461 - 36383526
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| |||||||||  || ||||||||  |||| ||||| ||||||| |||||||||||    
T  36383461 agagaaatgatatttgtacaaagattttgtgacaacttttgtacaactttctctctcatactcaca 36383526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 318
Target Start/End: Complemental strand, 38246821 - 38246760
Alignment:
Q  257 agaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactca 318  Q
    ||||||||| ||||||||||||  |||||||| ||||| || || ||||||| |||||||||    
T  38246821 agaaatgatatttgtacaatcaatttgtgacaatttttgtagaactttctctctcatactca 38246760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 30856807 - 30856871
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||  ||||||||  ||||| |||| ||||||| |||||||||||    
T  30856807 gagaaatgatatttgtacaaccactttgtgacaacttttagacaactttctctctcatactcaca 30856871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 41885719 - 41885785
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| |||||||||| || |||||| | |||||||||||||||| || |||||||||||    
T  41885719 aagagaaatgatatttgtacaattattttgtgatagtttttatacaattttcactctcatactcaca 41885785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 34941992 - 34941927
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||| ||||| |||||||| |||||| |||| ||||||| |||||||||||    
T  34941992 agagaaatgatatttgtactatcattttgtgacaatttttagacaactttctctctcatactcaca 34941927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 36669446 - 36669377
Alignment:
Q  251 aataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||||||| ||||||||||||  |||||| | ||||| ||||| ||| ||| |||||||||||    
T  36669446 aataagagaaatgatatttgtacaatcaatttgtgataatttttgtacaactttttctctcatactcaca 36669377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 25995460 - 25995524
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  25995460 gagaaatgatatttgtacaatcaatttgtgacaagttttgtacaactttctctctcatactcaca 25995524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 32821635 - 32821699
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||  ||||||||  ||||| |||||||||||| |||||||||||    
T  32821635 gagaaatgatatttgtacaaccactttgtgacaacttttaaacaattttctctctcatactcaca 32821699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 50528128 - 50528064
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||  ||||||||  ||||| |||||||| ||| |||||||||||    
T  50528128 gagaaatgatatttgtacaatcaatttgtgacaacttttagacaattttttctctcatactcaca 50528064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 36231776 - 36231713
Alignment:
Q  257 agaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||| ||||||||| ||| |||||||| | |||| |||| ||||||| |||||||||||    
T  36231776 agaaatgatatttgtacaaccattttgtgacaatatttagacaactttctctctcatactcaca 36231713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 49645361 - 49645424
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactca 318  Q
    ||||||||||| |||||| |||||| || |||||  |||| ||||||||||||| |||||||||    
T  49645361 agagaaatgatatttgtataatcattttatgacaacttttgtacaattttctctttcatactca 49645424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 18610771 - 18610837
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| |||||||||  || ||||||||  |||| ||||| ||||||| |||||||||||    
T  18610771 aagagaaatgatatttgtacaactattttgtgacaacttttttacaactttctctctcatactcaca 18610837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 42256458 - 42256524
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||| ||||||||  |||  ||||| ||||||| |||||||||||    
T  42256458 aagagaaatgatatttgtacaaccattttgtgacaactttggtacaactttctctctcatactcaca 42256524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 43755753 - 43755687
Alignment:
Q  252 ataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactca 318  Q
    |||||||||||||| ||||||||| ||| || ||| | |||||  |||||||||||| |||||||||    
T  43755753 ataagagaaatgatatttgtacaaccattttatgataattttttgacaattttctctttcatactca 43755687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 44672103 - 44672037
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||||||| || | |||  ||||  |||||||||||| |||||||||||    
T  44672103 aagagaaatgatatttgtacaatcattttttaacaactttttgacaattttctctctcatactcaca 44672037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 315
Target Start/End: Original strand, 835869 - 835930
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatac 315  Q
    |||| ||||||| ||||||||||||| |||| ||| ||||| ||||| ||||||| ||||||    
T  835869 aagataaatgatatttgtacaatcattttgttacaatttttgtacaactttctctctcatac 835930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 25130706 - 25130767
Alignment:
Q  259 aaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||| ||||||||||||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  25130706 aaatgatatttgtacaatcaatttgtgacaacttttgtacaactttctctctcatactcaca 25130767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 25989056 - 25988991
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||| || | |||  ||||| |||||||||||| |||||||||||    
T  25989056 agagaaatgatatttgtacaaccattttttaacaacttttagacaattttctctctcatactcaca 25988991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 27563483 - 27563548
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||||||| |||  | | |||||  |||||||||||| |||||||||||    
T  27563483 agagaaatgatatttgtacaatcattttgctataattttttgacaattttctctctcatactcaca 27563548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 30530646 - 30530581
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||| ||||| ||| ||||||||  ||||| |||| ||||||| |||||||||||    
T  30530646 agagaaatgatatttatacaaccattttgtgacaacttttagacaactttctctctcatactcaca 30530581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 1100213 - 1100281
Alignment:
Q  252 ataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||||| ||||||||| ||| ||   ||| ||||| ||||| ||||||| |||||||||||    
T  1100213 ataagagaaatgatatttgtacaaccatttttgtacaatttttgtacaactttctctatcatactcaca 1100281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 4604532 - 4604593
Alignment:
Q  257 agaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||| || ||||||||| || ||||||||| |||||| |||||||||||  |||||||||||    
T  4604532 agaaataatatttgtacaaccaccttgtgacaatttttagacaattttctc--tcatactcaca 4604593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 9011643 - 9011703
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcata 314  Q
    |||||||||||| ||||||||| ||| ||||||||  ||| |||||| ||||||| |||||    
T  9011643 aagagaaatgatatttgtacaaccattttgtgacaactttgatacaactttctctctcata 9011703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 16658438 - 16658502
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||  ||||||||  ||||| |||| ||||||| |||||||||||    
T  16658438 gagaaatgatatttgtacaaccacattgtgacaacttttagacaactttctctctcatactcaca 16658502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 29254137 - 29254073
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||  |||||||||||| || | ||| |||||| |||| ||||||| |||||||||||    
T  29254137 gagaaatgatacttgtacaatcattttttaacaatttttagacaactttctctctcatactcaca 29254073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 40118786 - 40118722
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||| ||   | | ||||| ||||||||||||| |||||||||||    
T  40118786 gagaaatgatatttgtacaatcatttttgtataatttttgtacaattttctctctcatactcaca 40118722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 40238438 - 40238502
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||| || |||||  ||||| |||||||| ||| ||||| |||||    
T  40238438 gagaaatgatatttgtacaatcattttttgacaacttttaaacaattttttctctcatattcaca 40238502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 45350166 - 45350102
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| |||||||||| || |||||| | |||||| | |||||| ||| |||||||||||    
T  45350166 gagaaatgatatttgtacaattattttgtgataatttttagataattttttctctcatactcaca 45350102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 49621363 - 49621427
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| |||| | | |||||| |||| ||||||| |||||||||||    
T  49621363 gagaaatgatatttgtacaaccattttgtaataatttttagacaactttctctctcatactcaca 49621427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 36064029 - 36064094
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||||||| ||||||||  ||||  |||||||||||| |||||||||||    
T  36064029 agagaaatgatatttgtacaatcattttgtgacaacttttggacaattttctctctcatactcaca 36064094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 37568685 - 37568621
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| |||||||| ||||||||||| |||| || |||||||||||    
T  37568685 gagaaatgatatttgtacaaacattttgtgacaatttttatacaactttccctttcatactcaca 37568621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 6806909 - 6806972
Alignment:
Q  257 agaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||| ||||||||||||| ||||||||  ||||| |||||||| ||| |||||||||||    
T  6806909 agaaatgatatttgtacaatcattttgtgacaacttttaaacaattttttctctcatactcaca 6806972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 42443103 - 42443168
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||||||| | ||||||  ||||| |||| ||||||| |||||||||||    
T  42443103 agagaaatgatatttgtacaatcatttagtgacaacttttagacaactttctctctcatactcaca 42443168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 41406927 - 41406863
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||| || ||||| |||||  |||| ||||||| |||||||||||    
T  41406927 gagaaatgatatttgtacaatcattttttgacaattttttaacaactttctctctcatactcaca 41406863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 30928003 - 30927940
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactca 318  Q
    ||||||||||| ||||||||| ||  |||||||| ||||| ||||| ||||||| |||||||||    
T  30928003 agagaaatgatatttgtacaaccaatttgtgacaatttttgtacaactttctctctcatactca 30927940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 41273512 - 41273579
Alignment:
Q  253 taagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||||| ||||||||| ||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  41273512 taagagaaatgatatttgtacaaacaatttgtgacaacttttgtacaactttctctctcatactcaca 41273579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 6004942 - 6005008
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| |||||||||  |  |||||||| |||||| |||| ||||||| |||||||||||    
T  6004942 aagagaaatgatatttgtacaactactttgtgacaatttttagacaactttctctctcatactcaca 6005008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 8841024 - 8841090
Alignment:
Q  250 aaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatact 316  Q
    |||||||||||||||| ||||||||| ||  |||||| | |||||  |||||||||||| |||||||    
T  8841024 aaataagagaaatgatatttgtacaaccactttgtgagaattttttgacaattttctctatcatact 8841090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 12045726 - 12045660
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||| | ||||||  ||||| |||| ||||||| |||||||||||    
T  12045726 aagagaaatgatatttgtacaaccatttagtgacaacttttagacaactttctctctcatactcaca 12045660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 316
Target Start/End: Original strand, 28156197 - 28156263
Alignment:
Q  250 aaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatact 316  Q
    |||||||||||||||| ||||||||| ||| |||  ||| ||||| ||||| ||||||| |||||||    
T  28156197 aaataagagaaatgatatttgtacaaccattttggtacaatttttgtacaactttctctctcatact 28156263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 32725853 - 32725787
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||  |||||| | |||||| |||||||| ||| |||||||||||    
T  32725853 aagagaaatgatatttgtacaaccactttgtgataatttttagacaattttttctctcatactcaca 32725787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 34473947 - 34474013
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| |||||||| |||  |||||||| | |||  |||||||||||| |||||||||||    
T  34473947 aagagaaatgatatttgtacattcactttgtgacaatcttttgacaattttctctctcatactcaca 34474013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 43186298 - 43186360
Alignment:
Q  258 gaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||| |||||||||| || |||||| | ||||| ||||| ||||||| |||||||||||    
T  43186298 gaaatgatatttgtacaattattttgtgataatttttgtacaactttctctctcatactcaca 43186360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 44380687 - 44380621
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||| ||||||||   |||| |||| ||||||| |||||||||||    
T  44380687 aagagaaatgatatttgtacaaccattttgtgacaacctttaaacaactttctctctcatactcaca 44380621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 317
Target Start/End: Original strand, 17492530 - 17492590
Alignment:
Q  257 agaaatgatttttgtacaatcatcttgtgacattttttata-caattttctctgtcatactc 317  Q
    ||||||||| ||||||||||||| ||||||||  |||| || ||||||||||||||||||||    
T  17492530 agaaatgatatttgtacaatcat-ttgtgacaacttttgtaacaattttctctgtcatactc 17492590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 33817148 - 33817217
Alignment:
Q  248 aaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactc 317  Q
    ||||| |||||||||||| ||||||||||||  |||| ||| ||||| ||||| ||||| | ||||||||    
T  33817148 aaaaaaaagagaaatgatatttgtacaatcaatttgtaacaatttttgtacaactttctttttcatactc 33817217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 43873762 - 43873698
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| |||||||| |||||  |||| | ||||| |||||||||||    
T  43873762 gagaaatgatatttgtacaaccattttgtgacaattttttgacaactctctctttcatactcaca 43873698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 27440479 - 27440543
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||| ||||||||  ||||  |||||||||||| |||||||||||    
T  27440479 gagaaatgatatttgtacaatcattttgtgacaacttttgaacaattttctctctcatactcaca 27440543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 35972576 - 35972638
Alignment:
Q  258 gaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||| ||||||||||||| |||| |||||||||  |||||||||||| | |||||||||    
T  35972576 gaaatgatatttgtacaatcattttgttacatttttttgacaattttctctcttatactcaca 35972638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 38010872 - 38010936
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||  |||||| |  |||| ||||||||||||| |||||||||||    
T  38010872 gagaaatgatatttgtacaatcaatttgtgataacttttgtacaattttctctctcatactcaca 38010936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 318
Target Start/End: Original strand, 38500941 - 38501005
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactca 318  Q
    |||||||||||| ||||||||| ||| |||||||| |||||  |||| ||||||| |||||||||    
T  38500941 aagagaaatgatatttgtacaaccattttgtgacaattttttgacaactttctctttcatactca 38501005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 32634705 - 32634772
Alignment:
Q  253 taagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||||| ||||||||||||   |||||||  |||| ||||| ||||||| |||||||||||    
T  32634705 taagagaaatgatatttgtacaatcaatctgtgacaacttttgtacaactttctctctcatactcaca 32634772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 12401190 - 12401256
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||||||  |||| |||  |||| ||||| ||||||| |||||||||||    
T  12401190 aagagaaatgatatttgtacaatcaatttgtaacaacttttttacaactttctctctcatactcaca 12401256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 9594477 - 9594542
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  9594477 agagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcatactcaca 9594542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 3263579 - 3263515
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||  ||||||||  |||| ||||||||| ||| |||||||||||    
T  3263579 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaattttttctctcatactcaca 3263515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 9599799 - 9599735
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  9599799 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcatactcaca 9599735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 16553504 - 16553568
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||| |||  |||  |||| ||||| ||||||| |||||||||||    
T  16553504 gagaaatgatatttgtacaatcattttgctacaaattttttacaactttctctctcatactcaca 16553568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 17063865 - 17063929
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||| || |||||  ||||| |||| ||| ||| |||||||||||    
T  17063865 gagaaatgatatttgtacaatcattttttgacaacttttaaacaactttatctctcatactcaca 17063929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 264 - 320
Target Start/End: Original strand, 28501625 - 28501681
Alignment:
Q  264 atttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||| |||||||| ||||| ||||| ||||||| ||||| |||||    
T  28501625 atttttgtacaaccattttgtgacaatttttgtacaactttctctctcatattcaca 28501681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 28903991 - 28904055
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||  ||||||||  ||||| |||| ||||||| |||||||||||    
T  28903991 gagaaatgatatttgtacaaccacattgtgacaacttttagacaactttctctctcatactcaca 28904055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 28940386 - 28940450
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||  ||||||||  ||||| |||| ||||||| |||||||||||    
T  28940386 gagaaatgatatttgtacaaccacattgtgacaacttttagacaactttctctctcatactcaca 28940450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 30574448 - 30574384
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  30574448 gagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcatactcaca 30574384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 35376624 - 35376560
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactca 318  Q
    |||||||||||| ||||||||| ||| |||||||| |||||| |||| ||||||| |||||||||    
T  35376624 aagagaaatgatatttgtacaaccattttgtgacaatttttagacaactttctctctcatactca 35376560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 53102977 - 53102909
Alignment:
Q  252 ataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||||| ||||||| ||||  ||||||||  |||||||||| ||||||| |||||||||||    
T  53102977 ataagagaaatgatatttgtacgatcaatttgtgacaacttttatacaactttctctctcatactcaca 53102909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 40419712 - 40419649
Alignment:
Q  257 agaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||| ||||||||||||| |||||| | |||||| |||||||||||| ||||| |||||    
T  40419712 agaaatgatatttgtacaatcattttgtgataatttttagacaattttctctctcatattcaca 40419649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 1902006 - 1901933
Alignment:
Q  247 taaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||| |||||||||||| ||||||||| ||  ||||||||  ||||| |||| ||||||| |||||||||||    
T  1902006 taaaaaaaagagaaatgatatttgtacaaccactttgtgacaacttttagacaactttctctctcatactcaca 1901933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 247 - 320
Target Start/End: Complemental strand, 1911452 - 1911379
Alignment:
Q  247 taaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||| |||||||||||| ||||||||| ||  ||||||||  ||||| |||| ||||||| |||||||||||    
T  1911452 taaaaaaaagagaaatgatatttgtacaaccactttgtgacaacttttagacaactttctctctcatactcaca 1911379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 108427 - 108495
Alignment:
Q  252 ataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||||| ||||||||| ||  |||||||| |||||  |||| ||||||| |||||||||||    
T  108427 ataagagaaatgatatttgtacaaccactttgtgacaattttttgacaactttctctctcatactcaca 108495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 11327108 - 11327172
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| ||||||||  |||| ||||| ||||||| |||||||||||    
T  11327108 gagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcaca 11327172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 20215946 - 20216009
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactc 317  Q
    |||||||||||| ||||||||| ||  |||||||| |||||| |||| ||||||| ||||||||    
T  20215946 aagagaaatgatatttgtacaaccactttgtgacaatttttagacaactttctctctcatactc 20216009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 34607992 - 34607929
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactca 318  Q
    ||||||||||| ||||||||| ||  |||||||| |||||| | |||||||||| |||||||||    
T  34607992 agagaaatgatatttgtacaaccactttgtgacaatttttagataattttctctttcatactca 34607929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 42755644 - 42755719
Alignment:
Q  245 aataaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||| ||| ||||||||||| ||||||||||  | || |||||  ||||| |||||||||||| |||||||||||    
T  42755644 aataataattagagaaatgatatttgtacaatatttttttgacaacttttaaacaattttctctctcatactcaca 42755719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 7287 - 7221
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||||||| || |||||  ||||  |||| ||||||| |||||||||||    
T  7287 aagagaaatgatatttgtacaatcattttctgacaacttttggacaactttctctctcatactcaca 7221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 7867784 - 7867718
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| |||||||||  || ||||||||  ||||| |||||||||| | |||||||||||    
T  7867784 aagagaaatgatatttgtacaactattttgtgacaacttttaaacaattttctttctcatactcaca 7867718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 8254025 - 8254091
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||| ||||||||  |||  ||||| ||||||| |||||||||||    
T  8254025 aagagaaatgatatttgtacaaccattttgtgacaactttggtacaactttctctctcatactcaca 8254091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 9159109 - 9159043
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||| ||   ||| ||||| ||||||||||||| |||||||||||    
T  9159109 aagagaaatgatatttgtacaaccatttttgtacaatttttgtacaattttctctttcatactcaca 9159043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 36818954 - 36819020
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  36818954 aagagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcatactcaca 36819020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 49196694 - 49196760
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||| ||||||||  |||   |||||||||||| |||||||||||    
T  49196694 aagagaaatgatatttgtacaaccattttgtgacaactttgtgacaattttctctctcatactcaca 49196760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 53932464 - 53932398
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||| |||||||| |||||  |||| |||| || |||||||||||    
T  53932464 aagagaaatgatatttgtacaaccattttgtgacaatttttggacaactttcactctcatactcaca 53932398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 32931990 - 32931925
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||  ||||||||  |||| ||||| ||||||| |||||||||||    
T  32931990 agagaaatgatatttgtacaaccaatttgtgacaacttttgtacaactttctctctcatactcaca 32931925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 36869909 - 36869844
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||| || |||||  ||||| |||| ||||||| |||||||||||    
T  36869909 agagaaatgatatttgtacaaccattttttgacaacttttagacaactttctctctcatactcaca 36869844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 38944213 - 38944148
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| |||||||||  |  ||||||||  |||| ||||||||||||| |||||||||||    
T  38944213 agagaaatgatatttgtacaactaatttgtgacaacttttgtacaattttctctctcatactcaca 38944148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 27198233 - 27198169
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactca 318  Q
    |||||||||||| ||||||||||||| || ||| |  ||||| |||||||| ||| |||||||||    
T  27198233 aagagaaatgatatttgtacaatcattttttgataacttttaaacaattttatctctcatactca 27198169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 29525233 - 29525297
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| |||||||| |||| || |||||  |||| |||||| |||||| |||||||||||    
T  29525233 gagaaatgatatttgtacattcattttatgacaacttttgtacaatattctctctcatactcaca 29525297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 38471638 - 38471706
Alignment:
Q  252 ataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||| |||||||| ||||||||| ||| |||  |||  |||| ||||||||||||| |||||||||||    
T  38471638 ataagtgaaatgatatttgtacaaccattttggtacaacttttgtacaattttctctctcatactcaca 38471706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 41309000 - 41309064
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||| ||||| ||||||||| ||  |||||||| |||||  |||||||||||| |||||||||||    
T  41309000 gagatatgatatttgtacaaccactttgtgacaattttttaacaattttctctctcatactcaca 41309064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 48205045 - 48205109
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||||||| ||   | | ||||| ||||||||||||| |||||||||||    
T  48205045 gagaaatgatatttgtacaatcatttttgtataatttttgtacaattttctctctcatactcaca 48205109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 48405407 - 48405475
Alignment:
Q  253 taagagaaatgatttttgtacaatcatcttgtgacattttttat-acaattttctctgtcatactcaca 320  Q
    ||||||||||||| ||||||||| ||| ||||||||  |||| | |||| ||||||| |||||||||||    
T  48405407 taagagaaatgatatttgtacaaccattttgtgacaacttttgtaacaactttctctctcatactcaca 48405475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 3339572 - 3339506
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||| ||||||||  |||| ||||| ||||||| |||||||||||    
T  3339572 aagagaaatgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcaca 3339506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 17417308 - 17417242
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| |||||||||||||  ||||||| |||||  |||| ||||||| |||||||||||    
T  17417308 aagagaaatgatatttgtacaatcattatgtgacaatttttggacaactttctctctcatactcaca 17417242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 30796148 - 30796082
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||  |||||||| ||||| ||||| ||||||| |||||||||||    
T  30796148 aagagaaatgatatttgtacaaccactttgtgacaatttttttacaactttctctttcatactcaca 30796082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 320
Target Start/End: Original strand, 32729887 - 32729953
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||| ||| || |||||  |||||||||| ||||||| |||||||||||    
T  32729887 aagagaaatgatatttgtacaaccattttctgacaacttttatacaactttctctctcatactcaca 32729953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 25554245 - 25554309
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| ||||| || ||||| ||||| ||||||| |||||||||||    
T  25554245 gagaaatgatatttgtacaaccattttgtggcaatttttttacaactttctctctcatactcaca 25554309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 25995442 - 25995506
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| ||||| || ||||| ||||| ||||||| |||||||||||    
T  25995442 gagaaatgatatttgtacaaccattttgtggcaatttttgtacaactttctctctcatactcaca 25995506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 3088970 - 3089037
Alignment:
Q  253 taagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||||| ||||||||| ||| | ||||||  ||||| |||||||||||| ||| |||||||    
T  3088970 taagagaaatgatatttgtacaaccatttagtgacaacttttagacaattttctctctcacactcaca 3089037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 15722576 - 15722510
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||| ||||||||||||| ||||||||  ||||  ||||  |||||| |||||||||||    
T  15722576 aagagaaatgatatttgtacaatcattttgtgacaactttttgacaaccttctctctcatactcaca 15722510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 320
Target Start/End: Complemental strand, 31934230 - 31934164
Alignment:
Q  254 aagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||| ||||||| ||||||||| ||| |||  ||| |||||  ||||||||||||||||||||||||    
T  31934230 aagacaaatgatatttgtacaaccattttgatacaatttttgaacaattttctctgtcatactcaca 31934164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 11017374 - 11017447
Alignment:
Q  247 taaaaataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||| ||||||||| || ||||||||||||  | ||||||  |||| ||||| ||||||| |||||||||||    
T  11017374 taaaaagaagagaaataatatttgtacaatcaattcgtgacaacttttgtacaactttctctctcatactcaca 11017447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 320
Target Start/End: Original strand, 34490350 - 34490411
Alignment:
Q  259 aaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||| ||||||||| ||| || | ||| |||||| |||||||||||| |||||||||||    
T  34490350 aaatgatatttgtacaaccattttttaacaatttttagacaattttctctctcatactcaca 34490411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 26094905 - 26094969
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| ||||| || ||||| ||||| ||| ||| |||||||||||    
T  26094905 gagaaatgatatttgtacaaccattttgtggcaatttttgtacaactttatctctcatactcaca 26094969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 28965915 - 28965847
Alignment:
Q  252 ataagagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||||||| ||||||||| ||| |||| |||  ||||  |||| ||||||| |||||||||||    
T  28965915 ataagagaaatgatatttgtacaaccattttgttacaactttttgacaactttctctctcatactcaca 28965847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 9920 - 9858
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactc 317  Q
    ||||||||||| ||||||||||||| || | ||| |||||  |||||||||||| ||||||||    
T  9920 agagaaatgatatttgtacaatcattttttcacaattttttgacaattttctctctcatactc 9858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0651 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0651
Description:

Target: scaffold0651; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 4918 - 4853
Alignment:
Q  255 agagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    ||||||||||| ||||||||| ||| |||  ||| ||||| ||||| ||||||| |||||||||||    
T  4918 agagaaatgatatttgtacaaccattttggtacaatttttgtacaactttctctctcatactcaca 4853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 16665 - 16601
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| |||| |||  ||||| | |||||||||| |||||||||||    
T  16665 gagaaatgatatttgtacaaccattttgtaacaacttttagataattttctctctcatactcaca 16601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 56179 - 56243
Alignment:
Q  256 gagaaatgatttttgtacaatcatcttgtgacattttttatacaattttctctgtcatactcaca 320  Q
    |||||||||| ||||||||| ||| |||| |||  ||||| | |||||||||| |||||||||||    
T  56179 gagaaatgatatttgtacaaccattttgtaacaacttttagataattttctctctcatactcaca 56243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University