View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15945_low_12 (Length: 419)

Name: NF15945_low_12
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15945_low_12
NF15945_low_12
[»] chr2 (2 HSPs)
chr2 (20-411)||(41070681-41071065)
chr2 (139-209)||(36904034-36904104)
[»] chr7 (2 HSPs)
chr7 (139-222)||(48488394-48488477)
chr7 (169-222)||(28514697-28514750)
[»] chr5 (2 HSPs)
chr5 (137-209)||(564896-564968)
chr5 (164-222)||(34338964-34339022)
[»] chr8 (2 HSPs)
chr8 (257-308)||(13018449-13018500)
chr8 (139-209)||(13079268-13079338)
[»] chr4 (2 HSPs)
chr4 (137-234)||(55969842-55969938)
chr4 (257-301)||(3121026-3121070)
[»] chr1 (2 HSPs)
chr1 (130-187)||(4044943-4045000)
chr1 (169-233)||(3831387-3831451)


Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 41070681 - 41071065
Alignment:
Q  20 tgaattatattggctatagatattagattgtgatccttagtttatgaaggagaccatttnnnnnnntattgggtgcgtgcgtttgttttaacnnnnnnnc 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||       |    
T  41070681 tgaattatattggctatagatattagattgtgatccttagtttatgaaggagaccatttaaaaaaatattgggtgcgtgcgtttgttttaacaaaaaa-c 41070779  T
Q  120 actttcgattaaaatatgaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataa 219  Q
    ||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||  |||||      |||||||||||||||||||||||||||||    
T  41070780 actttcgattaaaatatgaaaaatgttaacaagtgcatttataatattttttaagcattcaaaat------cgtttgcattggaaattgtggagttataa 41070873  T
Q  220 ctttagcatgtgtttctaagacaaannnnnnnnaataggttccttgaacaatgcgcttaggacacttgttaccaaaacctttaaaatatttagacatttt 319  Q
    ||||| ||||||||||||||||||         |||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||    
T  41070874 ctttaacatgtgtttctaagacaatttttttttaataggttccttaaacaatgcacttgggacacttgttagcaaaacctttaaaatatttagacatttt 41070973  T
Q  320 attttagagaatcgaaactaaaactagcacactcgaagtctcaagtcaacatcactaaaccaactcaactataaaattactacattcatctc 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  41070974 attttagagaatcgaaactaaaactagcacactcgaagtctcaagtcaacatcactaaaccaactcaaatatagaattactacattcatctc 41071065  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Complemental strand, 36904104 - 36904034
Alignment:
Q  139 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 209  Q
    |||||||||||||||||  | | |  ||| ||||||||||||||| |||| || |||||||||||||||||    
T  36904104 aaaatgctaacaagtgtcctaagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgt 36904034  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 48488394 - 48488477
Alignment:
Q  139 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 222  Q
    ||||||||||||||||  || | | |||| ||||||||||||||| |||| || |||||||||||||||||   ||||||||||    
T  48488394 aaaatgctaacaagtggcttaagggtattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataactt 48488477  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 28514750 - 28514697
Alignment:
Q  169 tttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 222  Q
    ||||||||||||||| |||| || |||||||||||||||||   ||||||||||    
T  28514750 tttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataactt 28514697  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 564896 - 564968
Alignment:
Q  137 gaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 209  Q
    ||||||||||||||| |||  ||| || ||| ||||||||||||||| |||  || |||||||||||||||||    
T  564896 gaaaaatgctaacaaatgtccttaggacattgtttaagcatctaaaaatagtaacttttgcattggaaattgt 564968  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 34339022 - 34338964
Alignment:
Q  164 tattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactt 222  Q
    |||| ||||||||||||||| |||| || ||||||||||||| ||||  ||||||||||    
T  34339022 tattgtttaagcatctaaaaatagcaacttttgcattggaaagtgtgtggttataactt 34338964  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 13018500 - 13018449
Alignment:
Q  257 ggttccttgaacaatgcgcttaggacacttgttaccaaaacctttaaaatat 308  Q
    |||||||| |||||||| |||||||||||||||| ||| ||| |||||||||    
T  13018500 ggttccttaaacaatgcccttaggacacttgttaacaagacccttaaaatat 13018449  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 209
Target Start/End: Original strand, 13079268 - 13079338
Alignment:
Q  139 aaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgt 209  Q
    |||||||||||| |||| |||| |||||| ||||||||||||||| |||  || ||| ||| |||||||||    
T  13079268 aaaatgctaacaggtgtttttaagatattgtttaagcatctaaaagtagtaacttttacataggaaattgt 13079338  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 55969842 - 55969938
Alignment:
Q  137 gaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgttt 234  Q
    ||||||||||||||||||| || | | |||| ||||||||| ||||| |||| || ||||||||  ||||||| | ||| | |||||| |||||||||    
T  55969842 gaaaaatgctaacaagtgt-ttaagggtattgtttaagcatataaaaatagcaacttttgcattaaaaattgtagggttgtgactttaacatgtgttt 55969938  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 301
Target Start/End: Complemental strand, 3121070 - 3121026
Alignment:
Q  257 ggttccttgaacaatgcgcttaggacacttgttaccaaaaccttt 301  Q
    |||||||| |||||||| |||||||||||||||| ||| ||||||    
T  3121070 ggttccttaaacaatgctcttaggacacttgttaacaacaccttt 3121026  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 187
Target Start/End: Complemental strand, 4045000 - 4044943
Alignment:
Q  130 aaaatatgaaaaatgctaacaagtgtatttatgatattttttaagcatctaaaattag 187  Q
    ||||||||||||||||||| |||| | |||| || ||| |||||||||||| ||||||    
T  4045000 aaaatatgaaaaatgctaataagtatctttaggacattgtttaagcatctataattag 4044943  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 3831387 - 3831451
Alignment:
Q  169 tttaagcatctaaaattagcgacgtttgcattggaaattgtggagttataactttagcatgtgtt 233  Q
    ||||||||||||||| |||  |  |||||||||||||||||  |||||| |||||| ||||||||    
T  3831387 tttaagcatctaaaagtagaaatttttgcattggaaattgtacagttatgactttaacatgtgtt 3831451  T

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