View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15945_low_14 (Length: 414)

Name: NF15945_low_14
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15945_low_14
NF15945_low_14
[»] chr3 (4 HSPs)
chr3 (85-396)||(25034964-25035273)
chr3 (249-396)||(44119102-44119252)
chr3 (320-396)||(798714-798790)
chr3 (211-240)||(44119754-44119783)
[»] scaffold0098 (1 HSPs)
scaffold0098 (243-384)||(3208-3349)
[»] chr7 (4 HSPs)
chr7 (252-378)||(19417689-19417815)
chr7 (242-378)||(7395236-7395372)
chr7 (271-371)||(4810344-4810444)
chr7 (306-371)||(27129079-27129144)
[»] chr4 (2 HSPs)
chr4 (294-386)||(10583611-10583703)
chr4 (243-370)||(8718076-8718203)
[»] scaffold0072 (1 HSPs)
scaffold0072 (242-371)||(36070-36199)
[»] scaffold0669 (1 HSPs)
scaffold0669 (287-371)||(4923-5007)
[»] chr2 (2 HSPs)
chr2 (243-396)||(15583066-15583220)
chr2 (338-366)||(22569532-22569560)
[»] chr1 (3 HSPs)
chr1 (317-386)||(20618158-20618226)
chr1 (242-318)||(15304740-15304816)
chr1 (242-330)||(15308527-15308615)
[»] chr5 (3 HSPs)
chr5 (254-371)||(18476338-18476455)
chr5 (339-386)||(16551257-16551304)
chr5 (280-372)||(18222019-18222111)
[»] scaffold0388 (1 HSPs)
scaffold0388 (289-385)||(5981-6077)
[»] scaffold0004 (1 HSPs)
scaffold0004 (100-132)||(121264-121296)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 85 - 396
Target Start/End: Complemental strand, 25035273 - 25034964
Alignment:
Q  85 tacatgtacaatagttctttgatggtaagaggtgtcaaatcaaagcaagactaagcctatttattggctaggcactgataaaagaggatttatgactttc 184  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25035273 tacaagtacaatagttctttgatggtaagtggtgccaaatcaaagcaacactaagcctatttattggctaggcactgataaaagaggatttatgactttc 25035174  T
Q  185 ctcagcacactcgtaataatgccgacttttatcaaaagataaaatatcgaatccacggattaaaagtactacatagatttctaactatttacattcaatc 284  Q
    |||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25035173 ctcaacacactcgtaagtatgccgacttttatcaaaagataaaatatcgaatccacggattaaaagtactacatagatttctaactatttacattcaatc 25035074  T
Q  285 ttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttcc 384  Q
    ||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25035073 ttaacataaaag--agtttagttatccataaaatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttcc 25034976  T
Q  385 taaacctccaat 396  Q
    ||||||||||||    
T  25034975 taaacctccaat 25034964  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 249 - 396
Target Start/End: Complemental strand, 44119252 - 44119102
Alignment:
Q  249 agtactacatagatttctaactatttacattcaatctt---aacataaaagaaagtttagttatccataagatgcataactaacataggagagttgatag 345  Q
    |||||| |||||||| |||||||||||| | ||||  |   |||| |||||| ||||||||||  |||   ||| |||||||||||| ||||||||||||    
T  44119252 agtactgcatagattcctaactatttacttccaataatcccaacacaaaagagagtttagttactcatgctatgaataactaacataagagagttgatag 44119153  T
Q  346 atgttggagaagcatcaacaagcttgattccaatcttcctaaacctccaat 396  Q
    ||||| | ||||| ||||||||||||||| ||| |||||||  ||||||||    
T  44119152 atgtttgtgaagcgtcaacaagcttgatttcaagcttcctagccctccaat 44119102  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 798714 - 798790
Alignment:
Q  320 cataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttcctaaacctccaat 396  Q
    ||||||||||||| ||||  | ||||||||||| ||||||||||||| ||||||||||| |||||||  ||||||||    
T  798714 cataactaacataagagacatcatagatgttggcgaagcatcaacaaacttgattccaagcttcctagccctccaat 798790  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 240
Target Start/End: Complemental strand, 44119783 - 44119754
Alignment:
Q  211 ttttatcaaaagataaaatatcgaatccac 240  Q
    ||||||||||||||||||||||||||||||    
T  44119783 ttttatcaaaagataaaatatcgaatccac 44119754  T

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Target: scaffold0098 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 243 - 384
Target Start/End: Complemental strand, 3349 - 3208
Alignment:
Q  243 attaaaagtactacatagatttctaactatttacattcaatcttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttga 342  Q
    ||||| ||||||||||||||||||| |||||||||| |||||  |||||||||||||||||||||| |||| | |||||||||||||| || ||||||||    
T  3349 attaagagtactacatagatttctacctatttacatccaatcccaacataaaagaaagtttagttacccatgatatgcataactaacaaagaagagttga 3250  T
Q  343 tagatgttggagaagcatcaacaagcttgattccaatcttcc 384  Q
    |  |||||||||||||||||| |||||||  ||||| |||||    
T  3249 tgaatgttggagaagcatcaataagcttgtctccaagcttcc 3208  T

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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 252 - 378
Target Start/End: Original strand, 19417689 - 19417815
Alignment:
Q  252 actacatagatttctaactatttacattcaatcttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttgatagatgttg 351  Q
    ||||||||| || ||| |||||||||| ||||||  ||| |||| | | |||||||| |||||||||| |||||||| ||| ||||||||||||||||||    
T  19417689 actacataggttcctagctatttacatccaatctcgacacaaaaaagaatttagttacccataagatgtataactaatataagagagttgatagatgttg 19417788  T
Q  352 gagaagcatcaacaagcttgattccaa 378  Q
    |||| |||||||||||||||| |||||    
T  19417789 gagatgcatcaacaagcttgaatccaa 19417815  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 242 - 378
Target Start/End: Original strand, 7395236 - 7395372
Alignment:
Q  242 gattaaaagtactacatagatttctaactatttacattcaatcttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttg 341  Q
    |||||| | ||||||||||||| ||||||||||| || ||| | |||||   |||| |||||||||| |||| | ||  | ||| |||||| ||||||||    
T  7395236 gattaatattactacatagattcctaactatttatatccaaccctaacaccgaagagagtttagttacccatgatatatagaacgaacataagagagttg 7395335  T
Q  342 atagatgttggagaagcatcaacaagcttgattccaa 378  Q
    |||| ||||||||||||||||||||||||||||||||    
T  7395336 atagctgttggagaagcatcaacaagcttgattccaa 7395372  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 4810444 - 4810344
Alignment:
Q  271 atttacattcaatcttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttgatagatgttggagaagcatcaacaagctt 370  Q
    |||||||| |||||  ||||| ||||| ||||||||||||||| ||||||| ||| |||| || || ||||||  ||||||| |||||||||||||||||    
T  4810444 atttacatccaatcccaacatgaaagagagtttagttatccatgagatgcacaaccaacaaagaagtgttgatgaatgttggtgaagcatcaacaagctt 4810345  T
Q  371 g 371  Q
    |    
T  4810344 g 4810344  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 27129079 - 27129144
Alignment:
Q  306 ttatccataagatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttg 371  Q
    |||||||| ||| |||||||||||| |  |||||||||||||||||  ||||||||||||| ||||    
T  27129079 ttatccatgagaagcataactaacacaaaagagttgatagatgttgaggaagcatcaacaaacttg 27129144  T

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Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 294 - 386
Target Start/End: Complemental strand, 10583703 - 10583611
Alignment:
Q  294 aagaaagtttagttatccataagatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttccta 386  Q
    |||| ||||||| || |||| | |||||||||||||||| || ||||||||||| |||||||||||||| ||||||||||||||| |||||||    
T  10583703 aagatagtttagatacccatgatatgcataactaacataagatagttgatagatattggagaagcatcaccaagcttgattccaagcttccta 10583611  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 370
Target Start/End: Original strand, 8718076 - 8718203
Alignment:
Q  243 attaaaagtactacatagatttctaactatttacattcaatcttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttga 342  Q
    ||||| |||||| |||| | | |||||||||||||| |||||  |||| |||||| |||||||||| |||| | |  ||||||||||| |  |  |||||    
T  8718076 attaagagtactgcataaaatcctaactatttacatccaatcccaacacaaaagagagtttagttacccatgaaaaacataactaacaaacaaaggttga 8718175  T
Q  343 tagatgttggagaagcatcaacaagctt 370  Q
    || || ||||||||| ||||||||||||    
T  8718176 taaatattggagaagtatcaacaagctt 8718203  T

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Target: scaffold0072 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 242 - 371
Target Start/End: Complemental strand, 36199 - 36070
Alignment:
Q  242 gattaaaagtactacatagatttctaactatttacattcaatcttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttg 341  Q
    ||||||||||||||||||||||||||  ||||||||| |||||  | || |||| | ||||||||||  ||| | |||||| ||||||| |  ||||||     
T  36199 gattaaaagtactacatagatttctagatatttacatccaatcccagcaaaaaatatagtttagttacacatgaaatgcatgactaacacaaaagagtta 36100  T
Q  342 atagatgttggagaagcatcaacaagcttg 371  Q
    ||| ||||| ||||||||||||||||||||    
T  36099 ataaatgttagagaagcatcaacaagcttg 36070  T

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Target: scaffold0669 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0669
Description:

Target: scaffold0669; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 287 - 371
Target Start/End: Original strand, 4923 - 5007
Alignment:
Q  287 aacataaaagaaagtttagttatccataagatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttg 371  Q
    |||| |||||| ||||||||||||||| |||||||| |||||||  ||||| |||||  ||||||||||||||||||||||||||    
T  4923 aacacaaaagagagtttagttatccatgagatgcatgactaacaagggagaattgatgaatgttggagaagcatcaacaagcttg 5007  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 243 - 396
Target Start/End: Original strand, 15583066 - 15583220
Alignment:
Q  243 attaaaagtactacatagatttctaactat-ttacattcaatcttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttg 341  Q
    ||||| || |||||| ||| ||||| |||| ||||||  ||||| |||| |||||| |||||||||| | || | ||| |||||||||| | ||  ||||    
T  15583066 attaagagcactacaaagaattctagctatcttacatctaatctcaacacaaaagagagtttagttaccaatgaaatgtataactaacaaaagaaggttg 15583165  T
Q  342 atagatgttggagaagcatcaacaagcttgattccaatcttcctaaacctccaat 396  Q
    |||||||||||| ||||||||||||| | || ||||| |||||||  ||||||||    
T  15583166 atagatgttggataagcatcaacaagttggaatccaagcttcctagccctccaat 15583220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 338 - 366
Target Start/End: Complemental strand, 22569560 - 22569532
Alignment:
Q  338 gttgatagatgttggagaagcatcaacaa 366  Q
    |||||||||||||||||||||||||||||    
T  22569560 gttgatagatgttggagaagcatcaacaa 22569532  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 317 - 386
Target Start/End: Original strand, 20618158 - 20618226
Alignment:
Q  317 atgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttccta 386  Q
    ||||||||||||||||| ||||||||||||||||||||||||||   |||  ||||||||||||||||||    
T  20618158 atgcataactaacatag-agagttgatagatgttggagaagcattgccaatattgattccaatcttccta 20618226  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 318
Target Start/End: Original strand, 15304740 - 15304816
Alignment:
Q  242 gattaaaagtactacatagatttctaactatttacattcaatcttaacataaaagaaagtttagttatccataagat 318  Q
    |||||| |||||||||||||||| || || |||||||  |||| ||||| |||||| |||||||||| |||| ||||    
T  15304740 gattaatagtactacatagatttgtagctttttacatcaaatcctaacacaaaagagagtttagttacccatgagat 15304816  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 330
Target Start/End: Original strand, 15308527 - 15308615
Alignment:
Q  242 gattaaaagtactacatagatttctaactatttacattcaatcttaacataaaagaaagtttagttatccataagatgcataactaaca 330  Q
    |||||| ||||||||||| |||  || |||| |||||  |||   ||||||||||| |||||||||| |||| |||||||| |||||||    
T  15308527 gattaagagtactacataaattcatagctatatacatctaattccaacataaaagagagtttagttacccatgagatgcatgactaaca 15308615  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 254 - 371
Target Start/End: Original strand, 18476338 - 18476455
Alignment:
Q  254 tacatagatttctaactatttacattcaatcttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttgatagatgttgga 353  Q
    |||||||||| ||| ||||||||||  |||   | || ||||||  ||||||||| ||||||||||||||| || || | |||||||||||||||| |      
T  18476338 tacatagattcctagctatttacatcgaataacagcacaaaagagtgtttagttacccataagatgcataaatatcacaagagagttgatagatgtggag 18476437  T
Q  354 gaagcatcaacaagcttg 371  Q
    ||| |||| |||||||||    
T  18476438 gaatcatccacaagcttg 18476455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 386
Target Start/End: Original strand, 16551257 - 16551304
Alignment:
Q  339 ttgatagatgttggagaagcatcaacaagcttgattccaatcttccta 386  Q
    |||||| ||||||||||| ||||||||||||||| |||||||| ||||    
T  16551257 ttgataaatgttggagaaacatcaacaagcttgaatccaatctcccta 16551304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 372
Target Start/End: Original strand, 18222019 - 18222111
Alignment:
Q  280 caatcttaacataaaagaaagtttagttatccataagatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttga 372  Q
    |||||| |||| |||||| |||||||||| ||||   || ||||||||||| | ||   || |||||||||||||||||||||| | ||||||    
T  18222019 caatctcaacacaaaagagagtttagttacccatggaattcataactaacaaaagaacattcatagatgttggagaagcatcaatatgcttga 18222111  T

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Target: scaffold0388 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 5981 - 6077
Alignment:
Q  289 cataaaagaaagtttagttatccataagatgcataactaacataggagagttgatagatgttggagaagcatcaacaagcttgattccaatcttcct 385  Q
    ||||||||||||||| ||||  ||||| |||| ||||||| | |  |  ||||||||||||||||||  |||||| |||||||  ||||| ||||||    
T  5981 cataaaagaaagtttggttacacataaaatgcttaactaataaaataacgttgatagatgttggagattcatcaagaagcttgtatccaagcttcct 6077  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 121264 - 121296
Alignment:
Q  100 tctttgatggtaagaggtgtcaaatcaaagcaa 132  Q
    |||||||||||||| ||||||||||||||||||    
T  121264 tctttgatggtaagtggtgtcaaatcaaagcaa 121296  T

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