View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_16 (Length: 369)
Name: NF15945_low_16
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 11669084 - 11669427
Alignment:
| Q |
16 |
tgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtt |
115 |
Q |
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| T |
11669084 |
tgacaaaccaggagctgtttgccaagaccctcgtttcattggtggagatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtt |
11669183 |
T |
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| Q |
116 |
tctgataacaacctccacatcaatgcccatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttg |
215 |
Q |
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| T |
11669184 |
tctgacaaaaacctacacatcaatgctcatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttg |
11669283 |
T |
|
| Q |
216 |
acaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgaagatcgccttgccctctcccttgacggcgaacccatcaccctcca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||||||||||||||| |
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| T |
11669284 |
acaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgtggatcgccttgccatctcctttgacggagaacccatcaccctcca |
11669383 |
T |
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| Q |
316 |
cgaatctgaaggtgcgaaatgggaatcatcgggcgtgtcctttg |
359 |
Q |
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| T |
11669384 |
cgaatctgaaggtgcgaaatgggaatcatccggcgtgtcctttg |
11669427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 11655316 - 11655659
Alignment:
| Q |
16 |
tgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtt |
115 |
Q |
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| T |
11655316 |
tgacaaaccaggagctgtttgccaagaccctcgtttcattggtggagatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtt |
11655415 |
T |
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| Q |
116 |
tctgataacaacctccacatcaatgcccatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttg |
215 |
Q |
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| T |
11655416 |
tctgacaaaaacctacacatcaatgctcatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttg |
11655515 |
T |
|
| Q |
216 |
acaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgaagatcgccttgccctctcccttgacggcgaacccatcaccctcca |
315 |
Q |
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| T |
11655516 |
acaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgtggatcgccttgccatctcatttgacggagaacccatcaccctcca |
11655615 |
T |
|
| Q |
316 |
cgaatctgaaggtgcgaaatgggaatcatcgggcgtgtcctttg |
359 |
Q |
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| T |
11655616 |
cgaatctgaaggtgcgaaatgggaatcatccggcgtgtcctttg |
11655659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 16 - 359
Target Start/End: Original strand, 11663773 - 11664116
Alignment:
| Q |
16 |
tgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11663773 |
tgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttactttcatggcaagaaagacaacaacttctgccttgtt |
11663872 |
T |
|
| Q |
116 |
tctgataacaacctccacatcaatgcccatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttg |
215 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11663873 |
tctgataacaacctccacatcaatgctcatttcataggtagaagaaatgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttg |
11663972 |
T |
|
| Q |
216 |
acaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgaagatcgccttgccctctcccttgacggcgaacccatcaccctcca |
315 |
Q |
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||||||||||||| |||||||||||||| |||||| | ||||||||||| |||| ||| || |||||||||||| ||||||| || |||||||| ||| | |
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| T |
11663973 |
acaatcaccaacttttccttggtgcccaaaaaacatcaacatgggatgattctgtagaccgtcttgccctctcctttgacggtgagcccatcactctcaa |
11664072 |
T |
|
| Q |
316 |
cgaatctgaaggtgcgaaatgggaatcatcgggcgtgtcctttg |
359 |
Q |
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|||||| ||||||||||||||||||||||| || || ||||||| |
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| T |
11664073 |
cgaatcagaaggtgcgaaatgggaatcatctggggtatcctttg |
11664116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 7344723 - 7344397
Alignment:
| Q |
16 |
tgacaaaccaggagctgtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtt |
115 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7344723 |
tgacaaaccaggagcggtttgccaagaccctcgtttcattggtggtgatggaatcactttttacttccatggcaagaaagacaacaacttctgccttgtt |
7344624 |
T |
|
| Q |
116 |
tctgataacaacctccacatcaatgcccatttcataggtagaagaaacgagaacatgaaaagagacttcacatgggtccaatccattgttattctctttg |
215 |
Q |
| |
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|| ||||||||||||||||| || || || ||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7344623 |
tccgataacaacctccacataaacgctcacttcattggtagaagaaacaagaacatgaaaagagacttcacatgggtacaatccattgttattctctttg |
7344524 |
T |
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| Q |
216 |
acaatcaccaactcttccttggtgcccagaaaacagccacatgggatgactctgaagatcgccttgccctctcccttgacggcgaacccatcaccctcca |
315 |
Q |
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||||||||||||| |||||||||||| | |||||| | ||||||||||| |||| ||| |||||||||||||| ||||||| ||||||||||||||||| |
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| T |
7344523 |
acaatcaccaacttttccttggtgccaaaaaaacatcaacatgggatgattctgtagaccgccttgccctctcttttgacggtgaacccatcaccctcca |
7344424 |
T |
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| Q |
316 |
cgaatctgaaggtgcgaaatgggaatc |
342 |
Q |
| |
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|||||| ||||| ||||||||||||| |
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| T |
7344423 |
cgaatcagaaggaacgaaatgggaatc |
7344397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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