View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_17 (Length: 364)
Name: NF15945_low_17
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 16 - 350
Target Start/End: Original strand, 16325211 - 16325543
Alignment:
| Q |
16 |
atgttttaccatagtgggtttgtagaagcaacaaatcatagagttactgaagcgtatggttttgatgtggttattgaattttccaaatgcagcttatgct |
115 |
Q |
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| T |
16325211 |
atgttttaccatagtgggtttgtagaagcaacaaatcatagaattactgaagcgtatggtttcgacgtggttattgaattttccaaatgcagcttatggt |
16325310 |
T |
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| Q |
116 |
taggttctaataaagcgtcgtctcgactctttatcaataccatattagaattttaatattgttgtcttaaccctctgtttttcaataaaatggaccaaat |
215 |
Q |
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| T |
16325311 |
taggttcta-taaagcgttgtctcgactctttatcaataccatattagaattttaatattgttgtcttaatcctctgtttttcaatagaatggaccaaat |
16325409 |
T |
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| Q |
216 |
aattcgaaatttgactaaaaggtaattaaaatcttactacatgttattccaaactaaatttaaaaatggatttttctgaacaacttgcttacactagaat |
315 |
Q |
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|||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
16325410 |
aatttgaaatttgactaaaagataagtaaaatcttactacatgttattccaaactaaatttaaaaatggatttttctgaacaa-ttgcttacactagaat |
16325508 |
T |
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| Q |
316 |
tctaatttggtatgctaagtttggaatgggctatt |
350 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
16325509 |
tctaatttggtatgctaagtttggaatgggctatt |
16325543 |
T |
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