View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_19 (Length: 360)
Name: NF15945_low_19
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 347
Target Start/End: Original strand, 52583695 - 52584039
Alignment:
| Q |
20 |
atgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaataatttatacataaacacttatttgataaactctagcacttaatt-- |
117 |
Q |
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| T |
52583695 |
atgaaaacatttatatagttcataccaaaacaatttgatttttgttttaaaaataatttatacataaacacttatttgataaactctagcacttaattaa |
52583794 |
T |
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| Q |
118 |
----------cgaatactactcaagtatgatgcaattttctttattagtactagtgaacataaaatcaggaag-----agaagaccaaccaacctcatcc |
202 |
Q |
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| T |
52583795 |
gctttttattcgaatactactcaagtatgatgcaattttctttattagtactagtgaacataaaatcaggaagagaagagaagaccaaccaacctcatcc |
52583894 |
T |
|
| Q |
203 |
aacaatgaaatgagctttgcaattttgacttgatgttcatgtttgtcagccaataaatgtccatgaatcctcaactctgctttgagctcagaggagagtg |
302 |
Q |
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| T |
52583895 |
aacaatgaaatgagctttgcaattttgacttgatgttcatgtttgtcagccaataaatgtccatgaatcctcaactctgctttgagctcagaggagagtg |
52583994 |
T |
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| Q |
303 |
ttctagcacctgttctactcccatgaaacaacttctcagcatatt |
347 |
Q |
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| T |
52583995 |
ttctagcacctgttctactcccatgaaacaacttctcagcatatt |
52584039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 38033934 - 38033892
Alignment:
| Q |
59 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
101 |
Q |
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| T |
38033934 |
ttttgttatataaataacttatacataaacacttatttgataa |
38033892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 101
Target Start/End: Complemental strand, 43133932 - 43133890
Alignment:
| Q |
59 |
ttttgttttaaaaataatttatacataaacacttatttgataa |
101 |
Q |
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|||||||||| |||||||||||||||||| |||||| |||||| |
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| T |
43133932 |
ttttgttttagaaataatttatacataaatacttatgtgataa |
43133890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 5939051 - 5939015
Alignment:
| Q |
58 |
tttttgttttaaaaataatttatacataaacacttat |
94 |
Q |
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|||||||| ||||||||| |||||||||||||||||| |
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| T |
5939051 |
tttttgttataaaaataacttatacataaacacttat |
5939015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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