View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_25 (Length: 293)
Name: NF15945_low_25
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 38111363 - 38111086
Alignment:
| Q |
1 |
taaattatttttattaatctataattgataattatcactgttatcaagtattttcaaagtttagattatatgaagaaaaaattcctaacatattcaattt |
100 |
Q |
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| T |
38111363 |
taaattatttttattaatctataattgataattatcactgttatcaagtattttcaaagttta-attatatgaagaaaaaattcctaacatattcaattt |
38111265 |
T |
|
| Q |
101 |
aat----ggttctgtttttcctacaagacatcatttgcaaaatagtcttcattggtcttaataactatgcaaacgaaattctgaacaagtttcagactgc |
196 |
Q |
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| T |
38111264 |
aatatatggttctgtttttcctacaagacatcatttgcaaaatagtcttcattggtcttaataactatgcaaacgaaattctgaacaagtctcagactgc |
38111165 |
T |
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| Q |
197 |
aatatattgctaccaagtaaacatccataaatctcatctcatactataatcttcaaaactttaggaattccagaactat |
275 |
Q |
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| T |
38111164 |
aatatattgctaccaagtaaacatccataaatctcatctcatactataatcttcaaaactttaggaattccagaactat |
38111086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 11203976 - 11203921
Alignment:
| Q |
137 |
aatagtcttcattggtcttaataactatgcaaacgaaattctgaacaagtttcaga |
192 |
Q |
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| T |
11203976 |
aatagtctttattggttttaataagtatgcaaaagaaattctgaaaaagtctcaga |
11203921 |
T |
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