View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15945_low_26 (Length: 290)

Name: NF15945_low_26
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15945_low_26
NF15945_low_26
[»] chr3 (6 HSPs)
chr3 (16-290)||(24720482-24720756)
chr3 (216-290)||(24733448-24733522)
chr3 (116-196)||(18157868-18157949)
chr3 (18-91)||(24692859-24692934)
chr3 (224-271)||(18157772-18157819)
chr3 (107-169)||(24692970-24693032)
[»] chr5 (2 HSPs)
chr5 (116-196)||(15282256-15282337)
chr5 (224-271)||(15282160-15282207)
[»] chr2 (2 HSPs)
chr2 (116-196)||(24223754-24223835)
chr2 (224-271)||(24223658-24223705)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 290
Target Start/End: Original strand, 24720482 - 24720756
Alignment:
Q  16 tttcaattactacacatatacacctattttcctttttcaattttgtgtcctcgaacttgctctatttggatggacaactagtatacatatgaactaaact 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24720482 tttcaattactacacatatacacctatgttcctttttcaattttgtgtcctcgaacttgctctatttggatggacaactagtatacatatgaactaaact 24720581  T
Q  116 aagccacatgaatgttacacctgagctgcttgcggtggttccaaattcggaggcagaggagcaatagtagcagaatttgaatgcatacgacgtgacagtt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24720582 aagccacatgaatgttacacctgagctgcttgcggtggttccaaattcggaggcagaggagcaatagtagcagaatttgaatgcatacgacgtgacagtt 24720681  T
Q  216 gataaaccaattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaataagttaatgataaaccaat 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24720682 gataaaccaattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaataagttaatgataaaccaat 24720756  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 24733522 - 24733448
Alignment:
Q  216 gataaaccaattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaataagttaatgataaaccaat 290  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||    
T  24733522 gatacaccaattcgatgcagttggtgtggcagactaaagtaaccactaaaacgaatgagttgatgatacaccaat 24733448  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 18157949 - 18157868
Alignment:
Q  116 aagccacatgaatgtt-acacctgagctgcttgcggtggttccaaattcggaggcagaggagcaatagtagcagaatttgaa 196  Q
    ||||||||||||| || | |||||||||||| || ||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  18157949 aagccacatgaatatttagacctgagctgctggctgtggttccaaatttggaggcagaggagcaatagcagcagcatttgaa 18157868  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 24692859 - 24692934
Alignment:
Q  18 tcaattactacacatatacacc--tattttcctttttcaattttgtgtcctcgaacttgctctatttggatggaca 91  Q
    ||||||| ||| ||||||||||  ||| | |||||||||| |||||||||| ||||||||||||||||||||||||    
T  24692859 tcaattattacgcatatacacccctatgtccctttttcaactttgtgtccttgaacttgctctatttggatggaca 24692934  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 18157819 - 18157772
Alignment:
Q  224 aattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaat 271  Q
    ||||| ||||||||||||||| ||||||||||||| ||| ||||||||    
T  18157819 aattcaatgcagttggtgtggaagactaaagtaactactaaaacgaat 18157772  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 169
Target Start/End: Original strand, 24692970 - 24693032
Alignment:
Q  107 aactaaactaagccacatgaatgttacacctgagctgcttgcggtggttccaaattcggaggc 169  Q
    |||||||| || |||||||||||||| ||||||| ||||| | |||||||| |||| ||||||    
T  24692970 aactaaaccaaaccacatgaatgttagacctgagatgcttcctgtggttccgaatttggaggc 24693032  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 15282337 - 15282256
Alignment:
Q  116 aagccacatgaatgtt-acacctgagctgcttgcggtggttccaaattcggaggcagaggagcaatagtagcagaatttgaa 196  Q
    ||||||||||||| || | |||||||||||| || ||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  15282337 aagccacatgaatatttagacctgagctgctggctgtggttccaaatttggaggcagaggagcaatagcagcagcatttgaa 15282256  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 15282207 - 15282160
Alignment:
Q  224 aattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaat 271  Q
    ||||| ||||||||||||||| ||||||||||||| ||| ||||||||    
T  15282207 aattcaatgcagttggtgtggaagactaaagtaactactaaaacgaat 15282160  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 196
Target Start/End: Complemental strand, 24223835 - 24223754
Alignment:
Q  116 aagccacatgaatgtt-acacctgagctgcttgcggtggttccaaattcggaggcagaggagcaatagtagcagaatttgaa 196  Q
    ||||||||||||| || | |||||||||||| || ||||||||||||| ||||||||||||||||||| ||||| |||||||    
T  24223835 aagccacatgaatatttagacctgagctgctggctgtggttccaaatttggaggcagaggagcaatagcagcagcatttgaa 24223754  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 271
Target Start/End: Complemental strand, 24223705 - 24223658
Alignment:
Q  224 aattcgatgcagttggtgtggcagactaaagtaacgactgaaacgaat 271  Q
    ||||| ||||||||||||||| ||||||||||||| ||| ||||||||    
T  24223705 aattcaatgcagttggtgtggaagactaaagtaactactaaaacgaat 24223658  T

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