View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_29 (Length: 272)
Name: NF15945_low_29
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 55825455 - 55825714
Alignment:
| Q |
1 |
tcgggatgcttcagcttcttgcttcagttcctgagcctttctgctcatctcttcagcttctctttttgcatcttctgtctccgattgtagcttctggatt |
100 |
Q |
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| T |
55825455 |
tcgggatgcttcagcttcttgcttcagttcctgagcctttctgctcatctcttcagcttctctttttgcatcttctgtctccgattgtagcttctggatt |
55825554 |
T |
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| Q |
101 |
ttacaacttttcatgtagaaaaaacattggcatccacggtacctggctgaggccccgcctcttctgcgctcttttgcaattcaccagtgaggttaaaagc |
200 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825555 |
ttacaacttttcatgtagaaaa--cattggcatccacggtacctggctgaggccccgcctcttctgcgctcttttgcaattcaccagtgaggttaaaagc |
55825652 |
T |
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| Q |
201 |
aagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtttca |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825653 |
aagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtttca |
55825714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 56149526 - 56149267
Alignment:
| Q |
1 |
tcgggatgcttcagcttcttgcttcagttcctgagcctttctgctcatctcttcagcttctctttttgcatcttctgtctccgattgtagcttctggatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149526 |
tcgggatgcttcagcttcttgcttcagttcctgagcctttctgctcatctcttctgcttctctttttgcatcttctgtctccgattgtagcttctggatt |
56149427 |
T |
|
| Q |
101 |
ttacaacttttcatgtagaaaaaacattggcatccacggtacctggctgaggccccgcctcttctgcgctcttttgcaattcaccagtgaggttaaaagc |
200 |
Q |
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| T |
56149426 |
ttacaacttttcatgtagaaaa--cattggcatccacggtacctggctgaggccccgcctcttctgcgctcttttgcatttcaccagtgaggttaaaagc |
56149329 |
T |
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| Q |
201 |
aagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtttca |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149328 |
aagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtttca |
56149267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 9883816 - 9883755
Alignment:
| Q |
198 |
agcaagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtt |
259 |
Q |
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||||||| |||| |||||||||| ||| |||||||| || ||||| |||||||||||||||| |
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| T |
9883816 |
agcaagagcttccgctgcttgttccttctccttaagctcctcttgttctttcttcacttgtt |
9883755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 81
Target Start/End: Complemental strand, 9884004 - 9883934
Alignment:
| Q |
11 |
tcagcttcttgcttcagttcctgagcctttctgctcatctcttcagcttctctttttgcatcttctgtctc |
81 |
Q |
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||||||||||| |||||||||||||| || | ||||||||||| ||||| || |||||| ||||||||| |
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| T |
9884004 |
tcagcttcttgtttcagttcctgagctttcattctcatctcttcttcttcttttcttgcattttctgtctc |
9883934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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