View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_31 (Length: 250)
Name: NF15945_low_31
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 42667100 - 42666886
Alignment:
| Q |
15 |
caaaggtaactaaatatgaaccaaaatgagtacatgttcttgtccactaggaaaactagtgttcttttagggtcagcttcctctatatggataaaaactt |
114 |
Q |
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| T |
42667100 |
caaagataactaaatatgaaccaaaatgagtacatgttcttgtccactaggaaaactagtgttcttttagggtc---ttcctctatatggataaaaactt |
42667004 |
T |
|
| Q |
115 |
gaatatcaaccacataaaaacaataatgtagtatgaatcttaacttagttaaaaacataaaactatatcaccatcatatgcatgaataatgatcgataaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42667003 |
gaatatcaaccacataaaaacaataatgtagtatgaatcttaacttagttaaaaacataaaactatatcaccatcatatgcatgaataatgatcgataaa |
42666904 |
T |
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| Q |
215 |
accgtactccgacatatg |
232 |
Q |
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|||||||||||||||||| |
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| T |
42666903 |
accgtactccgacatatg |
42666886 |
T |
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