View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_34 (Length: 240)
Name: NF15945_low_34
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6724170 - 6723949
Alignment:
| Q |
1 |
tccataaaaagaagagaaatgtccctaaaaacagttgtgattgtctctagaatatgatatgtcctatacataaataaatttctacatttttgctattcac |
100 |
Q |
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| T |
6724170 |
tccataaaaagaagagaaatgtccctaaaaacagttgtgattgtctctagaatatgatatgtcctatacataaataaatttctacatttttgctattcac |
6724071 |
T |
|
| Q |
101 |
aaagtagattacatggttatcatttcttaattgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttca |
200 |
Q |
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| T |
6724070 |
aaagtagattacatggttatcatttcttaattgaaaagaaaactaaagttgcacatgaggaaccaat-ccaactacaccataagcttacttccatcttca |
6723972 |
T |
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| Q |
201 |
aatgtatgctaatatgccgtttt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
6723971 |
aatgtatgctaatatgccgtttt |
6723949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Original strand, 22000498 - 22000570
Alignment:
| Q |
132 |
tgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgt |
205 |
Q |
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|||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||| |||| |||| |
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| T |
22000498 |
tgaaaagaaatccgaagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgt |
22000570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 205
Target Start/End: Complemental strand, 37983597 - 37983525
Alignment:
| Q |
132 |
tgaaaagaaaactaaagttgcacatgaggaaccaatcccaactacaccataagcttacttccatcttcaaatgt |
205 |
Q |
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|||||||||| | |||||||||||||||||||||||| ||| |||||||||||||||||| |||| |||| |
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| T |
37983597 |
tgaaaagaaatccgaagttgcacatgaggaaccaatcc-aacattgccataagcttacttccatattcacatgt |
37983525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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