View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_36 (Length: 235)
Name: NF15945_low_36
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14740618 - 14740398
Alignment:
| Q |
1 |
ttgtttttagaacttgggtcccttttgtatgttcatgatggaatttgtttctctagtctgaagacgttaaatctttcagatgttagatttgtggatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740618 |
ttgtttttagaacttgggtcccttttgtatgttcatgatggaatttgtttctctagtctgaagacgttaaatctttcagatgttagatttgtggatgaaa |
14740519 |
T |
|
| Q |
101 |
agtcagtgcagcaacttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttggaagaacgtaaacgagatcgctattgaaagttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14740518 |
agtcagtgcagcaacttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttggaagaacgtaaacgagatcgctattgaaagttc |
14740419 |
T |
|
| Q |
201 |
cacattaaggacattgaacat |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
14740418 |
cacattaaggacattgaacat |
14740398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Complemental strand, 14728979 - 14728926
Alignment:
| Q |
115 |
cttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttgg |
168 |
Q |
| |
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||||| |||||||||||||| ||| ||||||||| ||||||||| ||| ||||| |
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| T |
14728979 |
cttttgtctgggtgccctgtcctacaagagttgaccttgtataaatttttttgg |
14728926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 1e-83; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 17585585 - 17585801
Alignment:
| Q |
1 |
ttgtttttagaacttgggtcccttttgtatgttcatgatggaatttgtttctctagtctgaagacgttaaatctttcagatgttagatttgtggatgaaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| | |
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| T |
17585585 |
ttgtttttacaacttgggtcccttttgtatgttcgtgatggaatttgtttctctagtctgaagacgttaaatctttcatatgttagatttgtagatgaga |
17585684 |
T |
|
| Q |
101 |
agtcagtgcagcaacttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttggaagaacgtaaacgagatcgctattgaaagttc |
200 |
Q |
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|
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||| ||||||||| ||| |
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| T |
17585685 |
agtctgtgcaacaacttttctctgggtgccctgtgctagaagagttgatcttgtataattgtatttggcagtacataaacgagatcactattgaaaattc |
17585784 |
T |
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| Q |
201 |
cacattaaggacattga |
217 |
Q |
| |
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||||| | ||||||||| |
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| T |
17585785 |
cacataatggacattga |
17585801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 17594508 - 17594561
Alignment:
| Q |
115 |
cttttctctgggtgccctgtgctagaagagttgatcttgtataattttatttgg |
168 |
Q |
| |
|
||||| |||||||||||||| ||| ||||||||| ||||||||| ||| ||||| |
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|
| T |
17594508 |
cttttgtctgggtgccctgtcctacaagagttgaccttgtataaatttttttgg |
17594561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 11062626 - 11062723
Alignment:
| Q |
1 |
ttgtttttagaacttgggtcccttttgtatgttcatgatggaatttgtttctctagtctgaagacgttaaatctttcagatgttagatttgtggatga |
98 |
Q |
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||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||| ||||||||||||| ||||| |
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| T |
11062626 |
ttgtttttacaacttgggtcccttttgtatgttcctgagggaatttgtttctctagcctgaagacgttaaatttttcatatgttagatttgtagatga |
11062723 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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