View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_38 (Length: 227)
Name: NF15945_low_38
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_38 |
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| [»] scaffold0128 (1 HSPs) |
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| [»] scaffold0051 (1 HSPs) |
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| [»] scaffold0292 (1 HSPs) |
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| [»] scaffold0490 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 44652001 - 44651894
Alignment:
| Q |
102 |
attatcttttttgtataaatatttttcttaaaatgtgtggaatgatcatgtgagtcaatgataacagggaaaattacttatgttttaatatctaatctag |
201 |
Q |
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| T |
44652001 |
attatcttttttgtataaatatttttcttaaaatgtgtggaatgatcatgtgggtcaatgataacagcgaaaattactcatgttttaatatctaatctag |
44651902 |
T |
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| Q |
202 |
gtgcttat |
209 |
Q |
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|||||||| |
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| T |
44651901 |
gtgcttat |
44651894 |
T |
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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 22634753 - 22634667
Alignment:
| Q |
16 |
aatatcaaaagaggaaagagttaaaccaaaattagcaagactgtctgcacatgtatttccttctctataaatatgtgaagcacaaaa |
102 |
Q |
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| T |
22634753 |
aatatcaatagaagagagagataatccaaaattagcaagactgtcagcgcaagtatttccttctctataaatgtgcgaagcgcaaaa |
22634667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 23501 - 23584
Alignment:
| Q |
16 |
aatatcaaaagaggaaagagttaaaccaaaattagcaagactgtctgcacatgtatttccttctctataaatatgtgaagcaca |
99 |
Q |
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| T |
23501 |
aataacaaaagaggaaagagttaaaccaaaattagcaagactgtctgcacatgtatttccttctctgtaaatatgtgaagcaca |
23584 |
T |
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Target: scaffold0051 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 62797 - 62712
Alignment:
| Q |
17 |
atatcaaaagaggaaagagttaaaccaaaattagcaagactgtctgcacatgtatttccttctctataaatatgtgaagcacaaaa |
102 |
Q |
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| T |
62797 |
atatcaaacgaagaaagagataaaccaaaattagcaagtctgtcggctcaagtatttccctctctataaatgtgtgaagcacaaaa |
62712 |
T |
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Target: scaffold0292 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0292
Description:
Target: scaffold0292; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 21691 - 21777
Alignment:
| Q |
16 |
aatatcaaaagaggaaagagttaaaccaaaattagcaagactgtctgcacatgtatttccttctctataaatatgtgaagcacaaaa |
102 |
Q |
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|||||||| ||| || ||| ||| |||||||||||||||||||| || || |||||||||||||||||||| |||||||| ||||| |
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| T |
21691 |
aatatcaacagaagagagaaataatccaaaattagcaagactgtcagcgcaagtatttccttctctataaatgtgtgaagcgcaaaa |
21777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0490 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0490
Description:
Target: scaffold0490; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 10157 - 10091
Alignment:
| Q |
37 |
taaaccaaaattagcaagactgtctgcacatgtatttccttctctataaatatgtgaagcacaaaat |
103 |
Q |
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|||||||||||| |||||||| |||||||| |||||||||| || |||||||| |||||||||||| |
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| T |
10157 |
taaaccaaaattcgcaagactatctgcacaaatatttccttccctgtaaatatgagaagcacaaaat |
10091 |
T |
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