View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15945_low_41 (Length: 209)

Name: NF15945_low_41
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15945_low_41
NF15945_low_41
[»] scaffold0394 (1 HSPs)
scaffold0394 (58-129)||(5790-5861)
[»] chr7 (34 HSPs)
chr7 (50-129)||(44967338-44967417)
chr7 (58-129)||(37639521-37639592)
chr7 (58-129)||(43631643-43631714)
chr7 (58-129)||(3622407-3622478)
chr7 (70-129)||(9456195-9456254)
chr7 (126-181)||(44968631-44968686)
chr7 (51-129)||(48459801-48459879)
chr7 (72-129)||(10371919-10371976)
chr7 (50-129)||(386420-386499)
chr7 (58-129)||(3342881-3342952)
chr7 (58-129)||(37562661-37562732)
chr7 (58-129)||(47022010-47022081)
chr7 (51-129)||(34010430-34010507)
chr7 (52-126)||(46541694-46541768)
chr7 (49-129)||(32187031-32187111)
chr7 (54-129)||(3375581-3375656)
chr7 (58-129)||(34365929-34366000)
chr7 (58-129)||(38230159-38230230)
chr7 (58-129)||(41715748-41715819)
chr7 (58-129)||(48134670-48134741)
chr7 (79-129)||(24770879-24770929)
chr7 (58-129)||(19097488-19097559)
chr7 (58-121)||(39977651-39977714)
chr7 (58-129)||(43737886-43737957)
chr7 (82-129)||(47217512-47217559)
chr7 (79-129)||(3750777-3750827)
chr7 (79-129)||(12632051-12632101)
chr7 (54-128)||(34010904-34010978)
chr7 (79-129)||(36920146-36920196)
chr7 (91-129)||(42740483-42740521)
chr7 (58-129)||(39391084-39391155)
chr7 (51-130)||(42904643-42904722)
chr7 (80-126)||(12212438-12212484)
chr7 (82-126)||(12964692-12964736)
[»] chr5 (29 HSPs)
chr5 (58-129)||(10058158-10058229)
chr5 (58-129)||(41834976-41835047)
chr5 (54-129)||(24045914-24045989)
chr5 (44-129)||(7385875-7385960)
chr5 (52-129)||(7715024-7715101)
chr5 (58-130)||(4292232-4292304)
chr5 (58-129)||(22482273-22482344)
chr5 (52-129)||(5710337-5710414)
chr5 (52-129)||(42146391-42146468)
chr5 (54-130)||(27021211-27021287)
chr5 (58-129)||(32454620-32454692)
chr5 (58-122)||(35760280-35760344)
chr5 (58-129)||(9275441-9275512)
chr5 (58-129)||(32030798-32030869)
chr5 (79-129)||(8049029-8049079)
chr5 (79-129)||(39987945-39987995)
chr5 (52-129)||(2430248-2430325)
chr5 (80-129)||(3060203-3060252)
chr5 (77-129)||(40791046-40791098)
chr5 (66-122)||(41740558-41740614)
chr5 (70-129)||(13253052-13253111)
chr5 (58-129)||(40495315-40495386)
chr5 (58-122)||(3667945-3668009)
chr5 (133-181)||(28872080-28872128)
chr5 (58-129)||(40885295-40885366)
chr5 (80-126)||(35847869-35847915)
chr5 (81-129)||(16843613-16843661)
chr5 (126-166)||(28873525-28873565)
chr5 (58-121)||(33953859-33953922)
[»] chr4 (43 HSPs)
chr4 (51-129)||(13167580-13167658)
chr4 (54-129)||(9889291-9889366)
chr4 (58-129)||(16566360-16566431)
chr4 (58-129)||(26651808-26651879)
chr4 (58-129)||(43781479-43781550)
chr4 (52-129)||(19592185-19592262)
chr4 (58-129)||(14072557-14072628)
chr4 (58-129)||(26426075-26426146)
chr4 (58-129)||(28987073-28987144)
chr4 (58-129)||(39187789-39187860)
chr4 (54-128)||(14076070-14076144)
chr4 (47-129)||(54153099-54153181)
chr4 (52-129)||(46830023-46830100)
chr4 (58-129)||(6138580-6138651)
chr4 (58-129)||(25312770-25312841)
chr4 (58-129)||(30842186-30842257)
chr4 (50-129)||(32238011-32238090)
chr4 (58-129)||(39636840-39636911)
chr4 (58-129)||(54150581-54150652)
chr4 (79-129)||(48407679-48407729)
chr4 (51-129)||(48550272-48550350)
chr4 (56-121)||(9893774-9893839)
chr4 (79-128)||(14564127-14564176)
chr4 (66-122)||(29149275-29149331)
chr4 (82-129)||(43772107-43772154)
chr4 (58-129)||(51922995-51923066)
chr4 (79-129)||(49519785-49519835)
chr4 (54-128)||(54735607-54735681)
chr4 (79-129)||(55638736-55638786)
chr4 (52-129)||(15603415-15603492)
chr4 (56-129)||(46926103-46926176)
chr4 (82-130)||(6505255-6505303)
chr4 (50-129)||(13183002-13183081)
chr4 (82-129)||(48908328-48908375)
chr4 (54-129)||(53532032-53532107)
chr4 (80-126)||(4649911-4649957)
chr4 (80-129)||(42944880-42944929)
chr4 (58-129)||(31520331-31520402)
chr4 (82-129)||(38263954-38264001)
chr4 (58-129)||(41866209-41866280)
chr4 (82-129)||(49136577-49136624)
chr4 (79-129)||(33574233-33574283)
chr4 (80-120)||(16202532-16202572)
[»] chr8 (26 HSPs)
chr8 (58-129)||(22936753-22936824)
chr8 (52-129)||(3467611-3467688)
chr8 (58-129)||(4941741-4941812)
chr8 (58-129)||(30085599-30085670)
chr8 (58-129)||(30759265-30759336)
chr8 (58-129)||(38114522-38114593)
chr8 (58-129)||(42143324-42143395)
chr8 (58-129)||(3097166-3097237)
chr8 (66-129)||(25697928-25697991)
chr8 (58-129)||(26243202-26243273)
chr8 (58-129)||(36114001-36114072)
chr8 (79-129)||(27649823-27649873)
chr8 (52-122)||(44926940-44927010)
chr8 (79-128)||(38152156-38152205)
chr8 (80-129)||(44926918-44926967)
chr8 (58-129)||(24897548-24897619)
chr8 (82-128)||(440173-440219)
chr8 (80-126)||(3465422-3465468)
chr8 (79-129)||(36121526-36121576)
chr8 (80-129)||(25497769-25497818)
chr8 (82-122)||(29023308-29023348)
chr8 (58-129)||(28425432-28425503)
chr8 (79-129)||(40742276-40742326)
chr8 (79-121)||(41289039-41289081)
chr8 (81-121)||(33627017-33627057)
chr8 (97-129)||(40742202-40742234)
[»] chr6 (14 HSPs)
chr6 (50-129)||(13739275-13739354)
chr6 (50-129)||(13744775-13744854)
chr6 (58-129)||(17829958-17830029)
chr6 (58-129)||(33898965-33899036)
chr6 (44-129)||(10826161-10826246)
chr6 (60-124)||(29399755-29399819)
chr6 (80-126)||(15151487-15151533)
chr6 (52-129)||(6208017-6208094)
chr6 (81-129)||(21455950-21455998)
chr6 (81-128)||(699627-699674)
chr6 (82-129)||(16121985-16122032)
chr6 (79-129)||(32599443-32599493)
chr6 (49-129)||(1312390-1312470)
chr6 (82-130)||(31132532-31132580)
[»] chr1 (28 HSPs)
chr1 (47-129)||(31223468-31223550)
chr1 (50-129)||(20800230-20800309)
chr1 (52-129)||(1199921-1199998)
chr1 (58-129)||(11023291-11023362)
chr1 (58-129)||(35569163-35569234)
chr1 (52-129)||(50977295-50977372)
chr1 (53-129)||(42850175-42850251)
chr1 (58-129)||(10470683-10470754)
chr1 (50-129)||(43728831-43728910)
chr1 (50-129)||(48511002-48511081)
chr1 (79-130)||(49242964-49243015)
chr1 (52-126)||(6166206-6166280)
chr1 (52-129)||(7826309-7826386)
chr1 (58-129)||(13056091-13056162)
chr1 (58-129)||(25230100-25230171)
chr1 (58-129)||(26058335-26058406)
chr1 (58-129)||(47123480-47123551)
chr1 (52-129)||(50406224-50406301)
chr1 (58-129)||(5410733-5410804)
chr1 (58-129)||(27801613-27801684)
chr1 (79-129)||(6464701-6464751)
chr1 (79-129)||(15884321-15884371)
chr1 (80-126)||(29441281-29441327)
chr1 (60-129)||(45710142-45710211)
chr1 (58-129)||(12468306-12468376)
chr1 (82-129)||(34718545-34718592)
chr1 (58-129)||(36205285-36205356)
chr1 (79-129)||(43134544-43134594)
[»] chr2 (33 HSPs)
chr2 (52-129)||(1944991-1945068)
chr2 (52-129)||(5916194-5916271)
chr2 (58-129)||(36312355-36312426)
chr2 (52-129)||(42515928-42516005)
chr2 (58-129)||(7472632-7472703)
chr2 (58-129)||(9988459-9988530)
chr2 (58-129)||(32502064-32502135)
chr2 (59-129)||(31562646-31562716)
chr2 (52-129)||(36548278-36548355)
chr2 (58-122)||(2213592-2213656)
chr2 (58-122)||(28127245-28127309)
chr2 (58-129)||(2213726-2213797)
chr2 (58-129)||(2215331-2215402)
chr2 (66-129)||(30007519-30007582)
chr2 (70-129)||(39141440-39141499)
chr2 (51-129)||(8170391-8170469)
chr2 (79-129)||(44619040-44619090)
chr2 (80-130)||(45714648-45714698)
chr2 (82-130)||(7296233-7296281)
chr2 (81-129)||(38600424-38600472)
chr2 (81-129)||(41580691-41580739)
chr2 (82-129)||(26207911-26207958)
chr2 (79-129)||(34433285-34433335)
chr2 (52-129)||(14821241-14821318)
chr2 (81-126)||(23267345-23267390)
chr2 (82-130)||(7295330-7295378)
chr2 (82-129)||(25747864-25747911)
chr2 (70-129)||(28261373-28261432)
chr2 (82-129)||(31224759-31224806)
chr2 (82-129)||(42089510-42089557)
chr2 (79-129)||(18511181-18511231)
chr2 (51-129)||(23358337-23358414)
chr2 (52-130)||(34997188-34997266)
[»] scaffold0381 (1 HSPs)
scaffold0381 (54-129)||(9180-9255)
[»] chr3 (29 HSPs)
chr3 (58-129)||(4984651-4984722)
chr3 (58-129)||(50664828-50664899)
chr3 (49-129)||(38172258-38172338)
chr3 (58-129)||(10853227-10853298)
chr3 (58-129)||(23496387-23496458)
chr3 (50-129)||(38125394-38125473)
chr3 (52-129)||(55154571-55154648)
chr3 (58-122)||(26519741-26519805)
chr3 (58-129)||(10334208-10334279)
chr3 (58-129)||(38340875-38340946)
chr3 (82-129)||(53074972-53075019)
chr3 (52-129)||(48189396-48189473)
chr3 (58-129)||(8424690-8424761)
chr3 (58-129)||(30811492-30811563)
chr3 (82-129)||(42318399-42318446)
chr3 (79-129)||(35425403-35425453)
chr3 (52-129)||(15511330-15511407)
chr3 (82-129)||(34561178-34561225)
chr3 (82-129)||(52966793-52966840)
chr3 (79-121)||(35930816-35930858)
chr3 (79-129)||(42475779-42475829)
chr3 (58-126)||(3348316-3348384)
chr3 (82-126)||(52813288-52813332)
chr3 (82-129)||(19877487-19877534)
chr3 (86-129)||(29716674-29716717)
chr3 (58-129)||(44939376-44939447)
chr3 (79-129)||(21225060-21225110)
chr3 (58-129)||(16246056-16246125)
chr3 (82-130)||(23207052-23207100)
[»] scaffold0369 (1 HSPs)
scaffold0369 (52-129)||(8519-8596)
[»] scaffold0005 (1 HSPs)
scaffold0005 (79-128)||(253199-253248)
[»] scaffold0007 (1 HSPs)
scaffold0007 (82-129)||(29107-29154)
[»] scaffold0983 (1 HSPs)
scaffold0983 (60-129)||(2230-2299)
[»] scaffold0217 (1 HSPs)
scaffold0217 (82-130)||(2011-2059)


Alignment Details
Target: scaffold0394 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 5790 - 5861
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  5790 tgtgtttggtatggtggtagggagaattgattttgatataattgagtttgagagaattgattttggttaaaa 5861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 9e-26; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 44967338 - 44967417
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||| |||| ||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44967338 attaagtatgggtttggtatgacggtagcgagaattgattttgatataattgagtttgagagaattgattttggttaaaa 44967417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 37639592 - 37639521
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  37639592 tgtgtttggtatggcggcggggagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 37639521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 43631643 - 43631714
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  43631643 tgtgtttggtatggcggtggggataattgattttgatagaattgagtttgagagaattgattttggttaaaa 43631714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 3622407 - 3622478
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||  ||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  3622407 tgtgtttgttatggcggtggcgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 3622478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 9456254 - 9456195
Alignment:
Q  70 ggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  9456254 ggcggtagtgagaattgattttgatagaattaagttcgagagaattgattttggttaaaa 9456195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 126 - 181
Target Start/End: Original strand, 44968631 - 44968686
Alignment:
Q  126 aaaaactgtgtacaattgaagaagatagtattagggtttctaggatttctagtttt 181  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  44968631 aaaaactgtgtacaattgaagaagatagtattagggtttctagggtttctattttt 44968686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 48459879 - 48459801
Alignment:
Q  51 ttaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| ||||||| ||||| || | | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  48459879 ttaagtgtgtgtttggtatgacgttggtgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 48459801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 10371919 - 10371976
Alignment:
Q  72 cggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10371919 cggtggggagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 10371976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 386420 - 386499
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| |||||||| || ||||||| |  | ||||||||||||||||||| |||||||||| |||||||||||||||||    
T  386420 attaagcatgtgtttggtttggcggtggttaaaattgattttgatataattgagtttgagagtattgattttggttaaaa 386499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 3342952 - 3342881
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||| ||||||||| ||||||||| |||| |||||||||||||||||||| |||||||    
T  3342952 tgtgtttggtttggcggtggggagaattaattttgatagaattgagtttgagagaattgattttagttaaaa 3342881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 37562732 - 37562661
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||| ||||||||||||||||||| |||| ||||| |||||||||||||| |||||||    
T  37562732 tgtgtttggtttggcggtggggagaattgattttgatagaattgagtttaagagaattgatttttgttaaaa 37562661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 47022081 - 47022010
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||  ||| |||| |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  47022081 tgtgtttggtatgatggtggggataattgattttgatagaattgagtttgagagaattgattttggttaaaa 47022010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 34010507 - 34010430
Alignment:
Q  51 ttaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| ||||||| || ||||||| | ||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  34010507 ttaagtgtgtgtttggt-tggcggtggcgagaattgattttgatagaattgagtttgaaagaattgattttggttaaaa 34010430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 46541768 - 46541694
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    ||||||||||||| || ||||||| |  | |||||||||||||| |||| |||||||||||||||||||||||||    
T  46541768 taagtatgtgtttggtttggcggtggttaaaattgattttgatagaattgagtttgagagaattgattttggtta 46541694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 32187111 - 32187031
Alignment:
Q  49 aattaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||| | ||||| ||||| |||| | ||||||||||||||||| |||||| ||| ||||||||||||||| ||||||    
T  32187111 aattaagtgtatgtttggtatgacggtggcgagaattgattttgatagaattaattttaagagaattgattttgattaaaa 32187031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 3375656 - 3375581
Alignment:
Q  54 agtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||| ||| || | | | ||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  3375656 agtatgtgtttggtacggtgatggagagaattgattttgatagaattgagtttgagagaattaattttggttaaaa 3375581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 34365929 - 34366000
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| |  ||||||||||||||||||||  ||||||| |||||||||||| |||||||    
T  34365929 tgtgtttggtatggcggtggctagaattgattttgatataatggagtttgaaagaattgattttagttaaaa 34366000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 38230230 - 38230159
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  | ||||||||||||||||| |||| | ||| ||||||||||||||||||||||    
T  38230230 tgtgtttggtatggcggccgagagaattgattttgatagaattgaatttaagagaattgattttggttaaaa 38230159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 41715819 - 41715748
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| | ||| ||||||||||||||| ||||||    
T  41715819 tgtgtttggtatggcggtggcgagaattgattttgatagaattgattttaagagaattgattttgattaaaa 41715748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 48134741 - 48134670
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | || |||| ||||||||| |||| |||||||||||||||||||| |||||||    
T  48134741 tgtgtttggtatggcggttgcgaaaattaattttgatagaattgagtttgagagaattgatttttgttaaaa 48134670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 24770879 - 24770929
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||||| |||||||||||||| ||||||||||||||||||    
T  24770879 gagaattaattttgatagaattaagtttgagataattgattttggttaaaa 24770929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 19097559 - 19097488
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  | ||||||| ||||||||| |||| ||||||| ||||||||||||| ||||||    
T  19097559 tgtgtttggtatggcggcggtgagaattaattttgatagaattgagtttgaaagaattgattttgattaaaa 19097488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 39977714 - 39977651
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgatttt 121  Q
    ||||||| |||||||||| | || |||||||||||||| |||| ||||||| ||||||||||||    
T  39977714 tgtgtttggtatggcggtggcgataattgattttgatagaatttagtttgaaagaattgatttt 39977651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 43737886 - 43737957
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||   | ||||||||||||| | |||||| ||||| ||||||||||||||| ||||||    
T  43737886 tgtgtttagtatggcgacggtgagaattgattttaacataattgagtttaagagaattgattttgattaaaa 43737957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 47217512 - 47217559
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  47217512 aattgattttgatagaattgagtttgagagaattgattttgattaaaa 47217559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 3750827 - 3750777
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| |||||| ||| |||| ||||||||||||||||||||||||||||    
T  3750827 gagaatagattttaataaaattgagtttgagagaattgattttggttaaaa 3750777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 12632051 - 12632101
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| ||||  |||||||||||| ||||||||||||||    
T  12632051 gagaattgattttgatagaattttgtttgagagaatagattttggttaaaa 12632101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 34010904 - 34010978
Alignment:
Q  54 agtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaa 128  Q
    ||||||||||| || |||| |  | || |||||||||||||| |||| ||||||||| |||||||||||||||||    
T  34010904 agtatgtgtttggtttggcagcggtgataattgattttgatagaattgagtttgagaaaattgattttggttaaa 34010978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 36920146 - 36920196
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||||| |||| ||||||| ||||||||||||||||||||    
T  36920146 gagaattaattttgataaaattgagtttgaaagaattgattttggttaaaa 36920196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 91 - 129
Target Start/End: Complemental strand, 42740521 - 42740483
Alignment:
Q  91 tgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  42740521 tgatataattgagtttgagagaattgattttggttaaaa 42740483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 39391084 - 39391155
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | || |||||||||||||| |||| | |||   ||||||||||||||||||||    
T  39391084 tgtgtttggtatggcggtggcgaaaattgattttgatagaattgatttttttagaattgattttggttaaaa 39391155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 42904722 - 42904643
Alignment:
Q  51 ttaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    |||||| ||||||| ||||||| || || | |||  ||||||||| |||| ||||||||||||||| |||||| ||||||    
T  42904722 ttaagtgtgtgtttggtatggcagtgggaaaaatgaattttgatagaattgagtttgagagaattgtttttggataaaaa 42904643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 12212438 - 12212484
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    |||||||||||||||| |||| || ||||| ||||||||||||||||    
T  12212438 agaattgattttgatagaattgagcttgagtgaattgattttggtta 12212484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 12964736 - 12964692
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    |||||||||||||| |||| ||||||||| |||||||||| ||||    
T  12964736 aattgattttgatagaattgagtttgagataattgattttcgtta 12964692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 9e-26; HSPs: 29)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 10058229 - 10058158
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  10058229 tgtgtttagtatggcggtggggagaattgattttgatataattgagtttgagagtattgattttggttaaaa 10058158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 41835047 - 41834976
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  41835047 tgtgtttggtatggcggtggggagaattgattttgatagaattcagtttgagagaattgattttggttaaaa 41834976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 24045989 - 24045914
Alignment:
Q  54 agtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||| |||||||||| | ||||||||||||||||| |||| | ||||||||||||||||||||||||||    
T  24045989 agtatgtgtttggtatggcggtggtgagaattgattttgatagaattgaatttgagagaattgattttggttaaaa 24045914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 129
Target Start/End: Original strand, 7385875 - 7385960
Alignment:
Q  44 aaataaattaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||| ||| |||||||||||| ||||  | ||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  7385875 aaatacatttagtgtgtgtttagtatagcggcggtgagaattgattttgatagaattaagttttagagaattgattttggttaaaa 7385960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 7715101 - 7715024
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||| |||||||||| |  | |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  7715101 taagtatgtgttttgtatggcggtggtaaaaattgattttgatagaattgagtttgagagaattgattttggttaaaa 7715024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 4292304 - 4292232
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    ||||||| | ||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  4292304 tgtgtttgggatggcggcaggaagaattgattttgatagaattaagtttgagagaattgattttgattaaaaa 4292232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 22482344 - 22482273
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  ||||||||||||||||||| |||| | ||||||||||||||||||||||||||    
T  22482344 tgtgtttggtatggcggcggggagaattgattttgatagaattgattttgagagaattgattttggttaaaa 22482273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 5710337 - 5710414
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||| | ||||||||||||||||| |||  ||||||| ||||||||||||||||||||    
T  5710337 taagtgtgtgtttggtatggcggtggcgagaattgattttgatagaatggagtttgaaagaattgattttggttaaaa 5710414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 42146468 - 42146391
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| ||||| |||  ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  42146468 taagtgtgtgtttggtatgacggcggggagaattgattttgatagaattgagtttgagaaaattgattttggttaaaa 42146391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 27021287 - 27021211
Alignment:
Q  54 agtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    ||||||||||| || ||||||| |  |||| |||||||||||||||| ||||||||| |||||||||||||||||||    
T  27021287 agtatgtgtttggtttggcggtggttagaactgattttgatataattgagtttgagaaaattgattttggttaaaaa 27021211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 32454692 - 32454620
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgat-ataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | |||||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  32454692 tgtgtttggtatggcggtggcgagaattgattttgattagaattgagtttgagagaattgattttggttaaaa 32454620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 35760344 - 35760280
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttg 122  Q
    ||||||| |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  35760344 tgtgtttggtatagcggtggggagaattgattttgatagaattgagtttgagagaattgattttg 35760280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 9275441 - 9275512
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||| |||| |||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  9275441 tgtgtttggtttggcggtggggaaaattgattttgataaaattgagtttaagagaattgattttggttaaaa 9275512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 32030869 - 32030798
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| | ||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  32030869 tgtgtttggtatagtggtggagagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 32030798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 8049029 - 8049079
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  8049029 gagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 8049079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 39987945 - 39987995
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  39987945 gagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 39987995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 2430248 - 2430325
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||| ||| |||||||||| | ||||||| ||||||||  |||| ||||||||||||||||||||||||||||    
T  2430248 taagtgtgtatttggtatggcggtggcgagaattcattttgatggaattgagtttgagagaattgattttggttaaaa 2430325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 3060203 - 3060252
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  3060203 agaattgattttgatagaattaagtttgagagaattgattttgattaaaa 3060252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 40791046 - 40791098
Alignment:
Q  77 gggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  40791046 gggagaattgattttgatagaattgagtttgagaaaattgattttggttaaaa 40791098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 41740558 - 41740614
Alignment:
Q  66 gtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttg 122  Q
    ||||| |||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  41740558 gtatgccggtggggagaattgattttgatagaattgagtttgagagaattgattttg 41740614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 13253052 - 13253111
Alignment:
Q  70 ggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| | ||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  13253052 ggcggtggcgagaattgattttgatagaattgagtttgaaagaattgattttggttaaaa 13253111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 40495315 - 40495386
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  || |||||||||||||||| |||| ||||||| | ||||||||||||||||||    
T  40495315 tgtgtttggtatggcggcgggaagaattgattttgatagaattgagtttgatataattgattttggttaaaa 40495386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 3668009 - 3667945
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttg 122  Q
    ||||||| |||| | ||| | ||||||||||||||||| |||| |||||||||||||||||||||    
T  3668009 tgtgtttggtatagtggtggagagaattgattttgatagaattgagtttgagagaattgattttg 3667945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 28872080 - 28872128
Alignment:
Q  133 gtgtacaattgaagaagatagtattagggtttctaggatttctagtttt 181  Q
    ||||||||||||||||||| ||||||||||||||||| ||||| |||||    
T  28872080 gtgtacaattgaagaagatggtattagggtttctagggtttcttgtttt 28872128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 40885366 - 40885295
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | || ||||||||||| || |||| ||||| ||||||||||||||| ||||||    
T  40885366 tgtgtttggtatggcggtggtgaaaattgattttgttagaattgagtttaagagaattgattttgattaaaa 40885295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 35847869 - 35847915
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||||    
T  35847869 agaattgattttgatagaattgagtttgagtgaattgattttggtta 35847915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 16843661 - 16843613
Alignment:
Q  81 gaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||||||||| |||||||  |||| ||||||||||||||    
T  16843661 gaattgattttgatataattgagtttgaacgaatagattttggttaaaa 16843613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 28873525 - 28873565
Alignment:
Q  126 aaaaactgtgtacaattgaagaagatagtattagggtttct 166  Q
    ||||||||||||||||||||||||||  |||||||||||||    
T  28873525 aaaaactgtgtacaattgaagaagatgatattagggtttct 28873565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 33953859 - 33953922
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgatttt 121  Q
    ||||||| ||||||| || | || ||||||||||| || |||| ||||||||||||||||||||    
T  33953859 tgtgtttggtatggcagtggtgaaaattgattttggtagaattgagtttgagagaattgatttt 33953922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 3e-25; HSPs: 43)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 13167658 - 13167580
Alignment:
Q  51 ttaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| ||||||| ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  13167658 ttaagtgtgtgtttggtatggcggtaggaaaaattgattttgatataattgagtttgagagaattgattttggttaaaa 13167580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 9889291 - 9889366
Alignment:
Q  54 agtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  9889291 agtatgtgtttggtatggcggtggtgagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 9889366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 16566431 - 16566360
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||| | |||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  16566431 tgtgtttggtatggcagcagggagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 16566360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 26651808 - 26651879
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26651808 tgtgtttggtatggcggcggcgagaattgattttgatagaattaagtttgagagaattgattttggttaaaa 26651879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 43781479 - 43781550
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  43781479 tgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 43781550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 19592185 - 19592262
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| |||||||  ||||||||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  19592185 taagtgtgtgtttgatatggcggtggggagaattgattttgatagaattgagttttagagaattgattttggttaaaa 19592262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 14072628 - 14072557
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  14072628 tgtgtttggtatggcggtggtgagaattgattttgatagaattgagtttgagagaattgattttgtttaaaa 14072557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 26426075 - 26426146
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||| |||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  26426075 tgtgtttggtatgacggtggggagaattgattttgatagaattgagtttgagaaaattgattttggttaaaa 26426146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 28987144 - 28987073
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | || |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  28987144 tgtgtttggtatggcggtggtgaaaattgattttgatagaattgagtttgagagaattgattttggttaaaa 28987073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 39187860 - 39187789
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  39187860 tgtgtttggtttggcggtggagagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 39187789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 14076144 - 14076070
Alignment:
Q  54 agtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaa 128  Q
    |||||||||||||| ||||||  | ||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  14076144 agtatgtgtttagtttggcggcggtgagaattgattttgatagaattgagtttgagaaaattgattttggttaaa 14076070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 54153181 - 54153099
Alignment:
Q  47 taaattaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||| ||||||||||||| |||| ||||| | || |||||||||| |||||||| |||||||| |||||||||||||||||||    
T  54153181 taaaataagtatgtgtttggtatagcggtggcgataattgattttaatataattgagtttgagtgaattgattttggttaaaa 54153099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 46830023 - 46830100
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||||||    
T  46830023 taagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttaagtgaattgattttggttaaaa 46830100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 6138580 - 6138651
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||| ||||||||||||||||||| |||| ||||||| | ||||||||||||||||||    
T  6138580 tgtgtttggtttggcggtggggagaattgattttgatagaattgagtttgaaataattgattttggttaaaa 6138651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 25312841 - 25312770
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||||  ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  25312841 tgtgtttggtttggcggtaacgagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 25312770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 30842257 - 30842186
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||||||   ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  30842257 tgtgtttggtatggcggtgacgagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 30842186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 32238011 - 32238090
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||| |||| ||||| | || |||||||||||||| |||| |||||||| |||||||||||||||||||    
T  32238011 attaagtgtgtgtttggtatagcggtggcgataattgattttgatagaattgagtttgagtgaattgattttggttaaaa 32238090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 39636911 - 39636840
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||| |||| | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  39636911 tgtgtttggtatgacggtggcgagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 39636840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 54150652 - 54150581
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| |  |||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  54150652 tgtgtttggtatggcggtggcaagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 54150581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 48407679 - 48407729
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  48407679 gagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 48407729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 48550350 - 48550272
Alignment:
Q  51 ttaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| ||||||| |||||||||| | ||||||||||||||||| |||| | ||| ||||||||||||||| ||||||    
T  48550350 ttaagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgattttaagagaattgattttgattaaaa 48550272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 9893839 - 9893774
Alignment:
Q  56 tatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgatttt 121  Q
    ||||||||| |||||||||| | ||||||||||||||||| |||| | ||||||||||||||||||    
T  9893839 tatgtgtttggtatggcggtggtgagaattgattttgatagaattgaatttgagagaattgatttt 9893774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 14564127 - 14564176
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaa 128  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  14564127 gagaattgattttgatagaattgagtttgagagaattgattttggttaaa 14564176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 29149275 - 29149331
Alignment:
Q  66 gtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttg 122  Q
    |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  29149275 gtatagcggtggggagaattgattttgatagaattgagtttgagagaattgattttg 29149331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 43772107 - 43772154
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  43772107 aattgattttgatagaattgagtttgagagaattgattttggttaaaa 43772154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 51923066 - 51922995
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||    |||||||||||||| || |||| ||||||||||||||||||||||||||||    
T  51923066 tgtgtttggtatggcggcgacgagaattgattttgttagaattgagtttgagagaattgattttggttaaaa 51922995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 49519835 - 49519785
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  49519835 gagaattggttttgatagaattgagtttgagagaattgattttggttaaaa 49519785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 54735607 - 54735681
Alignment:
Q  54 agtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaa 128  Q
    |||||||| || || ||||||  | ||||||||||||||||| |||| ||||||||| |||||||||||||||||    
T  54735607 agtatgtgcttggtttggcggcggtgagaattgattttgatagaattgagtttgagaaaattgattttggttaaa 54735681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 55638736 - 55638786
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  55638736 gagaattgattttgatagaattgagtttgagagaattgatttttgttaaaa 55638786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 15603492 - 15603415
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| || || |||| ||||||||||||||||||| |||| ||||||||| |||||||| |||| ||||    
T  15603492 taagtgtgtgtttggtttgacggtggggagaattgattttgatagaattgagtttgagataattgattatggtaaaaa 15603415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Complemental strand, 46926176 - 46926103
Alignment:
Q  56 tatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||| ||| | |||| |||| |||||||||||||| |||| ||||||||| ||||| ||||||||||||    
T  46926176 tatgtgtttcgtacgacggtggggataattgattttgatagaattgagtttgagaaaattgtttttggttaaaa 46926103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 6505303 - 6505255
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||||    
T  6505303 aattgactttgatagaattgagtttgagagaattgattttggttaaaaa 6505255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 13183002 - 13183081
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||||| ||||| ||||   || |||||||||||||| |||| ||| ||||| ||||||||||||||||||    
T  13183002 attaattatgtgtttggtatgacggtgacgataattgattttgataaaattgagtctgagataattgattttggttaaaa 13183081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 48908375 - 48908328
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  48908375 aattgattttaatattattgagtttgagagaattgattttggttaaaa 48908328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 53532107 - 53532032
Alignment:
Q  54 agtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||| ||  |||||| | ||||||||||||||||| |||| ||||||| | |||||||||| |||||||    
T  53532107 agtatgtgtttggttcggcggtggtgagaattgattttgataaaattgagtttgacataattgattttagttaaaa 53532032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 4649911 - 4649957
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||||    
T  4649911 agaattgattttgataaaattgagtttgagtgaattgattttggtta 4649957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 42944880 - 42944929
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| ||||||||| |||| | ||||||||||||||||||||||||||    
T  42944880 agaatttattttgatagaattgattttgagagaattgattttggttaaaa 42944929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 31520331 - 31520402
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| ||| | | |||||||||||||| || ||| |||||||| |||||| |||||||||||||    
T  31520331 tgtgtttggtatagcgatggcgagaattgattttggtagaatgaagtttgaaagaattaattttggttaaaa 31520402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 38264001 - 38263954
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||||| ||||||||| |||| |||||| ||||||    
T  38264001 aattgattttgatataattgagtttgagaaaattaattttgcttaaaa 38263954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 41866280 - 41866209
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||| | || |||||||||||||| |||| |||||||| ||||||| ||| |||||||    
T  41866280 tgtgtttggtttggcggtggcgataattgattttgataaaattgagtttgagggaattgagtttagttaaaa 41866209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 49136624 - 49136577
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||| || ||||||| |||||||||||||||||| |||||||||    
T  49136624 aattgattctggtataattgagtttgagagaattgattatggttaaaa 49136577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 33574283 - 33574233
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||  |||||||| |||| |||||||||||||| |||||||||||||    
T  33574283 gagaattatttttgatagaattgagtttgagagaattaattttggttaaaa 33574233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 16202532 - 16202572
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattt 120  Q
    |||||||||||||||| |||| | |||||||||||||||||    
T  16202532 agaattgattttgataaaattgattttgagagaattgattt 16202572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 22936753 - 22936824
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  22936753 tgtgtttggtatggcggtggcgagaattgattttgatagaattaagtttgagagaattgattttggttaaaa 22936824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 3467688 - 3467611
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  3467688 taagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 3467611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 4941741 - 4941812
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| |  |||||||||| |||||||||| ||||||||||||||||||||| ||||||    
T  4941741 tgtgtttggtatggcggtggctagaattgattctgatataattgagtttgagagaattgattttgattaaaa 4941812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 30085599 - 30085670
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| ||||  | |||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  30085599 tgtgtttggtatagcggcggtgagaattgattttgatataattgagtttaagagaattgattttggttaaaa 30085670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 30759265 - 30759336
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||| | || |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  30759265 tgtgtttggtttggcgatgggaagaattgattttaatataattgagtttgagagaattgattttggttaaaa 30759336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 38114593 - 38114522
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||| | ||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  38114593 tgtgtttggtttggcggtggtgagaatttattttgatagaattgagtttgagagaattgattttggttaaaa 38114522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 42143324 - 42143395
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | ||||||||||| |||||||||| ||||||||| |||||||||| |||||||    
T  42143324 tgtgtttggtatggcggtggcgagaattgattatgatataattgagtttgagaaaattgattttagttaaaa 42143395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 3097166 - 3097237
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| || || | ||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  3097166 tgtgtttggtatagcagtggtgagaattaattttgatagaattgagtttgagagaattgattttggttaaaa 3097237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 25697928 - 25697991
Alignment:
Q  66 gtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||| ||||| | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  25697928 gtatagcggtggagagaattgattttgatagaattgagtttgagagaattgattttgcttaaaa 25697991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 26243273 - 26243202
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| |||| || ||||||||||||||||| |||| ||||| |||||||||||||| |||||||    
T  26243273 tgtgtttggtatagcggcagtgagaattgattttgatagaattgagtttaagagaattgatttttgttaaaa 26243202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 36114001 - 36114072
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||| |||  | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  36114001 tgtgtttggtatgacggcggtgagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 36114072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 27649873 - 27649823
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||||||||||    
T  27649873 gagaattgattttgatagaattgagtttgaaagaattgattttggttaaaa 27649823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 44927010 - 44926940
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttg 122  Q
    ||||| ||||||| |||||||||| | ||||||||||||||||| |||| ||||||| |||||||| ||||    
T  44927010 taagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttgatagaattgagtttg 44926940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 38152156 - 38152205
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaa 128  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||    
T  38152156 gagaattgattttgatagaattaagtttgagaaaattgattttagttaaa 38152205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 44926967 - 44926918
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  44926967 agaattgagtttgatagaattgagtttgagagaattgattttggttaaaa 44926918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 24897548 - 24897619
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  |  |||||||||||||||| |||| |||||  |||||||||||||||||||||    
T  24897548 tgtgtttggtatggcggcggtaagaattgattttgataaaattgagtttatgagaattgattttggttaaaa 24897619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 440173 - 440219
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaa 128  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||    
T  440173 aattgattttgatagaattgagtctgagagaattgattttggttaaa 440219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 3465422 - 3465468
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||||    
T  3465422 agaattgattttgatagaattgagtttgagtgaattgattttggtta 3465468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 36121526 - 36121576
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| ||||| || |||||||||||||||||||    
T  36121526 gagaattgattttgatagaattgagtttaagtgaattgattttggttaaaa 36121576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 25497818 - 25497769
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||||| |||| |||||  |||||||||||||||||||||    
T  25497818 agaattgattttgataaaattgagtttaggagaattgattttggttaaaa 25497769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 29023348 - 29023308
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttg 122  Q
    |||||||||||||| |||| |||||||||||||||||||||    
T  29023348 aattgattttgatagaattgagtttgagagaattgattttg 29023308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 28425432 - 28425503
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||| |||| | || |||||||||||||| |||| | ||||  ||||||||||||||||||||    
T  28425432 tgtgtttggtatgacggtggcgaaaattgattttgatagaattgattttgttagaattgattttggttaaaa 28425503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 40742276 - 40742326
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| ||||| | |||||||||||| |||||||    
T  40742276 gagaattgattttgatagaattgagtttaaaagaattgattttcgttaaaa 40742326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 41289039 - 41289081
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgatttt 121  Q
    ||||||||||||||| | |||| ||||||||||||||||||||    
T  41289039 gagaattgattttgacagaattgagtttgagagaattgatttt 41289081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 121
Target Start/End: Original strand, 33627017 - 33627057
Alignment:
Q  81 gaattgattttgatataattaagtttgagagaattgatttt 121  Q
    ||||||||||||||| |||| ||||||| ||||||||||||    
T  33627017 gaattgattttgatagaattgagtttgaaagaattgatttt 33627057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 40742234 - 40742202
Alignment:
Q  97 aattaagtttgagagaattgattttggttaaaa 129  Q
    |||| ||||||||||||||||||||||||||||    
T  40742234 aattgagtttgagagaattgattttggttaaaa 40742202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 13739354 - 13739275
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13739354 attaagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 13739275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 13744854 - 13744775
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13744854 attaagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 13744775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 17829958 - 17830029
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| || || ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  17829958 tgtgtttggtatagctgtggggagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 17830029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 33898965 - 33899036
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| ||||| | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  33898965 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 33899036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 10826246 - 10826161
Alignment:
Q  44 aaataaattaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| |||| || ||||||| || ||||||  | ||||||| ||||||||| |||| ||||||||||||||||||||||||||||    
T  10826246 aaatagattaggtgtgtgtttggtttggcggcggtgagaattaattttgataaaattgagtttgagagaattgattttggttaaaa 10826161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 29399755 - 29399819
Alignment:
Q  60 tgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggt 124  Q
    ||||| || ||||||| | ||||||||||||||||| |||| ||||||| |||||||||||||||    
T  29399755 tgtttggtttggcggtggagagaattgattttgatagaattgagtttgatagaattgattttggt 29399819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 15151487 - 15151533
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||||    
T  15151487 agaattgattttgatagaattgagtttgagtgaattgattttggtta 15151533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 6208017 - 6208094
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||| ||||| | || |||||||||||||| |||| | |||||| |||||||||||| ||||||    
T  6208017 taagtgtgtgtttggtatagcggtggcgataattgattttgatagaattgattttgagtgaattgattttgattaaaa 6208094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 21455998 - 21455950
Alignment:
Q  81 gaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||||||||| ||||||  |||||||||||| |||||||    
T  21455998 gaattgattttgatataattgagtttgtaagaattgattttagttaaaa 21455950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 699674 - 699627
Alignment:
Q  81 gaattgattttgatataattaagtttgagagaattgattttggttaaa 128  Q
    ||||||||||||||| |||| ||||||| |||||||||||| ||||||    
T  699674 gaattgattttgatagaattgagtttgaaagaattgattttagttaaa 699627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 16121985 - 16122032
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||| | ||||| ||||||||||||||||||||    
T  16121985 aattgattttgataaaattgattttgatagaattgattttggttaaaa 16122032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 32599443 - 32599493
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| | ||| ||||||||||||||| ||||||    
T  32599443 gagaattgattttgatagaattgaatttaagagaattgattttgattaaaa 32599493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 1312390 - 1312470
Alignment:
Q  49 aattaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||| ||||||| ||   ||||| | || |||||||||||||| |||  ||||||| | ||||||||||||||||||    
T  1312390 aattaagtgtgtgtttggttcagcggtggagaaaattgattttgatagaatcgagtttgataaaattgattttggttaaaa 1312470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 31132580 - 31132532
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    |||||||||||||| |||| ||||||||| |||| ||||||| ||||||    
T  31132580 aattgattttgatagaattgagtttgagataatttattttggctaaaaa 31132532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 47 - 129
Target Start/End: Complemental strand, 31223550 - 31223468
Alignment:
Q  47 taaattaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||| ||||||| || ||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  31223550 taaattaagtgtgtgtttggtttggcggtggggagaattgattttaatagaattgagtttgagagaattgattttggttaaaa 31223468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 20800230 - 20800309
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||| |||||||||  ||||||||||||||||||| |||| | ||||||||||||||||||||||||||    
T  20800230 attaagtgtgtgtttggtatggcggcggggagaattgattttgatagaattgattttgagagaattgattttggttaaaa 20800309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 1199998 - 1199921
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||| | ||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  1199998 taagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttgagagaattaattttggttaaaa 1199921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 11023291 - 11023362
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | || |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  11023291 tgtgtttggtatggcggtggtgaaaattgattttgatagaattgagtttgagagaattgattttggttaaaa 11023362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 35569163 - 35569234
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  ||||||||||||||||||| |||| | ||||||||||||||||||||||||||    
T  35569163 tgtgtttggtatggcggcggggagaattgattttgatagaattgattttgagagaattgattttggttaaaa 35569234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 50977295 - 50977372
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||| | ||||||||||||||||| |||  ||||||| ||||||||||||||||||||    
T  50977295 taagtgtgtgtttggtatggcggtggcgagaattgattttgatagaatggagtttgaaagaattgattttggttaaaa 50977372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 42850175 - 42850251
Alignment:
Q  53 aagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||| ||||||| |||||||||| | ||||||||||||||||| |||| ||||| || |||||||||||||||||||    
T  42850175 aagtgtgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttaagtgaattgattttggttaaaa 42850251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 10470754 - 10470683
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||| |||||| | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  10470754 tgtgtttggtagggcggtggcgagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 10470683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 43728831 - 43728910
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||| |||| ||| | | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  43728831 attaagtgtgtgtttggtatagcgatggagagaattgattttgatagaattgagtttgagagaattgattttgcttaaaa 43728910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 48511081 - 48511002
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||| |||||||||  | ||||||||||||||||  |||| ||||||||| ||||||||||||||||||    
T  48511081 attaagtgtgtgtttggtatggcggcggcgagaattgattttgattgaattgagtttgagataattgattttggttaaaa 48511002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 49242964 - 49243015
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  49242964 gagaattaattttgatataattgagtttgagagaattgattttggttaaaaa 49243015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 6166280 - 6166206
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    ||||| ||||||| |||| ||||| | ||||||||||||||||| |||| | |||||||||||||||||||||||    
T  6166280 taagtgtgtgtttggtatcgcggtggtgagaattgattttgatagaattgaatttgagagaattgattttggtta 6166206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 7826309 - 7826386
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| || ||||||| | || |||||||||||||| |||| | ||||||||||||||||||||||||||    
T  7826309 taagtgtgtgtttggtttggcggtggagaaaattgattttgatagaattgattttgagagaattgattttggttaaaa 7826386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 13056162 - 13056091
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | || |||||||||||||| |||  ||||||| ||||||||||||||||||||    
T  13056162 tgtgtttggtatggcggtggcgataattgattttgatagaatggagtttgaaagaattgattttggttaaaa 13056091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 25230171 - 25230100
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||| |||| | ||||||||||||||||| || | |||||||||||||||||||| |||||||    
T  25230171 tgtgtttggtatgacggtggcgagaattgattttgatagaactgagtttgagagaattgattttagttaaaa 25230100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 26058406 - 26058335
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| | ||| ||||||||||||||| ||||||    
T  26058406 tgtgtttggtatggcggtggcgagaattgattttgatagaattgattttaagagaattgattttgattaaaa 26058335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 47123551 - 47123480
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| |  | |||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  47123551 tgtgtttggtatggcggtggcaaaaattgattttgatagaattgagtttgagagaattgattttgattaaaa 47123480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 50406301 - 50406224
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||| ||||| | ||||||||||||||||| |||| ||||||| ||| ||||||||| ||||||    
T  50406301 taagtgtgtgtttggtatagcggtggcgagaattgattttgataaaattgagtttgaaagatttgattttgattaaaa 50406224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 5410804 - 5410733
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||  | |||||||||||||||||||||| | ||||| ||||||||||||| ||||||    
T  5410804 tgtgtttggtttggcggcggcgagaattgattttgatataattgaatttgaaagaattgattttgattaaaa 5410733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 27801613 - 27801684
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||| |||| | ||||||||||||||||| |||| | ||| ||||||||||||||| ||||||    
T  27801613 tgtgtttggtatgacggtggcgagaattgattttgatagaattgattttaagagaattgattttgattaaaa 27801684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 6464751 - 6464701
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||||||||||| |||||||| || || |||||||||||||    
T  6464751 gagaattgattttgatataattgagtttgagtgagttcattttggttaaaa 6464701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 15884371 - 15884321
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| | || ||||||| ||||||||||||||||||||    
T  15884371 gagaattgattttgatagagttgagtttgacagaattgattttggttaaaa 15884321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 29441327 - 29441281
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    |||||||||||||||| |||| |||||||| ||||||||||||||||    
T  29441327 agaattgattttgatagaattgagtttgagtgaattgattttggtta 29441281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 129
Target Start/End: Complemental strand, 45710211 - 45710142
Alignment:
Q  60 tgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| |||| ||||| | || |||||||||||||| |||| |||||||| |||||||||||| ||||||    
T  45710211 tgtttggtatagcggtggcgataattgattttgatagaattgagtttgagtgaattgattttgattaaaa 45710142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 12468376 - 12468306
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  || ||||||||||| |||| |||| ||||||| | ||||||||||||||||||    
T  12468376 tgtgtttggtatggcggcgggaagaattgattt-gatagaattgagtttgatataattgattttggttaaaa 12468306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 34718592 - 34718545
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||| ||||||||| |||| |||||||||||||    
T  34718592 aattgattttgatagaattgagtttgagataattaattttggttaaaa 34718545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 36205356 - 36205285
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||| |||| | ||||||||||||| |   |||| ||||||||||||||||||||| ||||||    
T  36205356 tgtgtttggtatgacggtggtgagaattgattttaacggaattgagtttgagagaattgattttgattaaaa 36205285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 43134594 - 43134544
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| |||| |||| ||||| ||||||||||||||||||||||    
T  43134594 gagaatttatttggatagaattgagtttaagagaattgattttggttaaaa 43134544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 33)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 1944991 - 1945068
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  1944991 taagtgtgtgtttggtatggcggcggggagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 1945068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 5916194 - 5916271
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  5916194 taagtgtgtgtttggtatggcggcggggagaattgattttgatagaattaattttgagagaattgattttggttaaaa 5916271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 36312426 - 36312355
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  36312426 tgtgtttggtatggcggcggggagaattgattttgatagaattaattttgagagaattgattttggttaaaa 36312355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 42515928 - 42516005
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||| |||||||||| | || ||||||||||||||||||| |||||||||||||||||||| |||||||    
T  42515928 taagtatatgtttggtatggcggtggagaaaattgattttgatataattgagtttgagagaattgattttagttaaaa 42516005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 7472632 - 7472703
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||| |||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  7472632 tgtgtttggtatgacggtggcgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 7472703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 9988459 - 9988530
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||| ||||||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  9988459 tgtgtttggtttggcggtggggagaattgattttgatagaattgagtttgagagaattgatttttgttaaaa 9988530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 32502135 - 32502064
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | || |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  32502135 tgtgtttggtatggcggtcgtgaaaattgattttgatagaattgagtttgagagaattgattttggttaaaa 32502064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 31562646 - 31562716
Alignment:
Q  59 gtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| |||||| ||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  31562646 gtgtttggtatggtggtggcgagaattgattttgataaaattgagtttgagagaattgattttggttaaaa 31562716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 36548355 - 36548278
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||| | || |||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  36548355 taagtgtgtgtttggtatggcggtggtgaaaattgattttgatagaattgagtttgagagaattgattttgattaaaa 36548278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 2213656 - 2213592
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttg 122  Q
    ||||||| |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  2213656 tgtgtttggtatagcggtggggagaattgattttgatagaattgagtttgagagaattgattttg 2213592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 28127245 - 28127309
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttg 122  Q
    ||||||| |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  28127245 tgtgtttggtatagcggtggggagaattgattttgatagaatttagtttgagagaattgattttg 28127309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 2213797 - 2213726
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||| |  | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2213797 tgtgtttggtatggcagatgagagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 2213726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 2215402 - 2215331
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| ||||| | ||||||||||||||||| |||| || |||||||||||||||||||||||||    
T  2215402 tgtgtttggtatagcggttgtgagaattgattttgatagaattgagcttgagagaattgattttggttaaaa 2215331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 66 - 129
Target Start/End: Original strand, 30007519 - 30007582
Alignment:
Q  66 gtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||||||||||||||| |||| |||||||||||||| |||||||||||||    
T  30007519 gtatggctgtggggagaattgattttgatagaattgagtttgagagaattaattttggttaaaa 30007582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 39141440 - 39141499
Alignment:
Q  70 ggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| | |||||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  39141440 ggcggtggcgagaattgattttgatataattgagtttgaaagaattgattttggttaaaa 39141499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 8170469 - 8170391
Alignment:
Q  51 ttaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| ||||||| ||| |||||| | ||||||| ||||||||| |||| ||||||||||||||||||||| ||||||    
T  8170469 ttaagtgtgtgtttggtagggcggtggcgagaattaattttgatagaattgagtttgagagaattgattttgattaaaa 8170391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 44619040 - 44619090
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  44619040 gagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 44619090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 45714648 - 45714698
Alignment:
Q  80 agaattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  45714648 agaattgattttgatataattgagtttgagagaattgattttgattaaaaa 45714698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 7296281 - 7296233
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  7296281 aattgactttgatataattgagtttgagagaattgattttggttaaaaa 7296233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 38600424 - 38600472
Alignment:
Q  81 gaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||||  |||||||||||||||||||||||||||||||||    
T  38600424 gaattaattttgatcgaattaagtttgagagaattgattttggttaaaa 38600472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 41580691 - 41580739
Alignment:
Q  81 gaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||    
T  41580691 gaattgattttgatcgaattgagtttgagagaattgattttggttaaaa 41580739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 26207911 - 26207958
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  26207911 aattgattttgatagaattaattttgagagaattggttttggttaaaa 26207958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Original strand, 34433285 - 34433335
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| ||||||| ||||||||||||| ||||||    
T  34433285 gagaattgattttgatagaattgagtttgacagaattgattttgattaaaa 34433335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 14821318 - 14821241
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||| |||| |||||   || |||| ||||||||| |||| |||||||| ||||||||||| |||||||    
T  14821318 taagtatgtgtttggtatagcggtgacgataattaattttgatagaattgagtttgagtgaattgattttagttaaaa 14821241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 23267345 - 23267390
Alignment:
Q  81 gaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||||    
T  23267345 gaattgattttgatagaattgagtttgagtgaattgattttggtta 23267390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 7295330 - 7295378
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    |||| ||||||||| |||| |||||||||||||||||| ||||||||||    
T  7295330 aattaattttgatagaattgagtttgagagaattgattctggttaaaaa 7295378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 25747864 - 25747911
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| ||||||| |||| ||||||||||||||||||||| ||||||    
T  25747864 aattgagtttgatagaattgagtttgagagaattgattttgattaaaa 25747911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 70 - 129
Target Start/End: Complemental strand, 28261432 - 28261373
Alignment:
Q  70 ggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| | ||||||| ||||| ||| |||| ||||||||||||||||||||| ||||||    
T  28261432 ggcggtggagagaattaattttaatacaattgagtttgagagaattgattttgcttaaaa 28261373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 31224806 - 31224759
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||| ||||||| |||||||||||| |||||||    
T  31224806 aattgattttgatagaattgagtttgaaagaattgattttagttaaaa 31224759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 42089510 - 42089557
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||||||||  ||||||||||||||| ||||||    
T  42089510 aattgattttgatagaattaagttcaagagaattgattttgattaaaa 42089557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 18511231 - 18511181
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| | ||||| | ||||||||||||||||||    
T  18511231 gagaattgattttgataaaattgattttgatataattgattttggttaaaa 18511181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 23358414 - 23358337
Alignment:
Q  51 ttaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||| ||||||| |||||| | | | ||||||||||||  ||| |||| ||||||||||||||||||||| ||||||    
T  23358414 ttaagtgtgtgtttggtatggtgttggcgagaattgattta-atagaattgagtttgagagaattgattttgattaaaa 23358337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 34997188 - 34997266
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    ||||||||||||| || |||| |  | || |||||||||||||| |||| ||||||| | |||||||||| ||||||||    
T  34997188 taagtatgtgtttggtttggctgcggtgaaaattgattttgataaaatttagtttgacaaaattgatttttgttaaaaa 34997266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 129
Target Start/End: Complemental strand, 9255 - 9180
Alignment:
Q  54 agtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  9255 agtatgtgtttggtatggcggtggtgagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 9180  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 4984722 - 4984651
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||||    
T  4984722 tgtgtttggtatggcggtggggagaattgattttgatataattgaatttgagaaaattgattttggttaaaa 4984651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 50664899 - 50664828
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  50664899 tgtgtttggtatggcggtggcgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 50664828  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 49 - 129
Target Start/End: Original strand, 38172258 - 38172338
Alignment:
Q  49 aattaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||| ||| ||||||| || ||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  38172258 aattgagtgtgtgtttggtttggcggtggggagaattgattttaatagaattgagtttgagagaattgattttggttaaaa 38172338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 10853227 - 10853298
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| ||||| | ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10853227 tgtgtttggtatagcggtggtgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 10853298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 23496458 - 23496387
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||||   |||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  23496458 tgtgtttggtatggcggcgaggagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 23496387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 38125394 - 38125473
Alignment:
Q  50 attaagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||||||| ||||||||||   ||||||||||||||||| |||| | ||||||||||||||||||||||||||    
T  38125394 attaagtgtgtgtttggtatggcggtgacgagaattgattttgatagaattgaatttgagagaattgattttggttaaaa 38125473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 55154648 - 55154571
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| ||||||| || | ||||||||||||||||| |||| |||||||||||||||||||| |||||||    
T  55154648 taagtgtgtgtttggtatggcagtggcgagaattgattttgatagaattgagtttgagagaattgattttagttaaaa 55154571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 26519805 - 26519741
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttg 122  Q
    ||||||| |||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  26519805 tgtgtttggtatagcggtggggagaattgattttgatagaattgagtttgagagaattgattttg 26519741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 10334279 - 10334208
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||  |||||||||   ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  10334279 tgtgtttgatatggcggtgacgagaattgattttgatagaattgagtttgagagaattgattttggttaaaa 10334208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 38340946 - 38340875
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||||||| | | ||||||||||||||||| ||| |||||||| ||||||||||||||||||||    
T  38340946 tgtgtttggtatggcgttggtgagaattgattttgatagaatgaagtttgaaagaattgattttggttaaaa 38340875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 53075019 - 53074972
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53075019 aattgattttgatataattgagtttgagagaattgattttggttaaaa 53074972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 48189396 - 48189473
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| ||| |||||| | || |||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  48189396 taagtgtgtgtttggtagggcggtggcgataattgattttgatagaattgagtttgagagaattgattttgattaaaa 48189473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 8424690 - 8424761
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||| ||||| |  | |||||| ||||||| |||| ||||||||||||||||||||||||||||    
T  8424690 tgtgtttagtatagcggtggtcataattgaatttgatagaattgagtttgagagaattgattttggttaaaa 8424761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 30811492 - 30811563
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| ||| ||||||   |||||||||||||||||||||| | ||||||||||||||||||| ||||||    
T  30811492 tgtgtttggtagggcggtgacgagaattgattttgatataattgaatttgagagaattgattttgattaaaa 30811563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 42318446 - 42318399
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  42318446 aattgattttgatagaattgagtttgagagaattgattttggttaaaa 42318399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 35425453 - 35425403
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||||||| |||| ||||||||||||||||||||| ||||||    
T  35425453 gagaattgattttgatagaattgagtttgagagaattgattttgattaaaa 35425403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 15511330 - 15511407
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||| | || |||||||||||||| ||   ||||||| ||||||||||||||||||||    
T  15511330 taagtgtgtgtttggtatggcggtggcgataattgattttgatagaacggagtttgaaagaattgattttggttaaaa 15511407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 34561225 - 34561178
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||||||||||| | ||||||||||||||||||    
T  34561225 aattgattttgatagaattaagtttgataaaattgattttggttaaaa 34561178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 52966793 - 52966840
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||| | ||||||||||||||||||||||||||    
T  52966793 aattgattttgatagaattgattttgagagaattgattttggttaaaa 52966840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 35930858 - 35930816
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgatttt 121  Q
    ||||||||||||||||| |||| ||||||||||||||||||||    
T  35930858 gagaattgattttgatagaattgagtttgagagaattgatttt 35930816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 42475829 - 42475779
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||| ||||||    
T  42475829 gagaattgatttttatagaattgagtttgagagaattgattttgattaaaa 42475779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 3348384 - 3348316
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    ||||||| | || ||||| | ||||||||||||||||| |||| ||||| || ||||||||||||||||    
T  3348384 tgtgtttggcatagcggtggcgagaattgattttgatagaattgagtttaagtgaattgattttggtta 3348316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 52813332 - 52813288
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggtta 126  Q
    |||||||||||||| |||| |||||||| ||||||||||||||||    
T  52813332 aattgattttgatagaattgagtttgagtgaattgattttggtta 52813288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 82 - 129
Target Start/End: Complemental strand, 19877534 - 19877487
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||| ||||||||| |||| ||||||| ||||||||||||||||||||    
T  19877534 aatttattttgatagaattgagtttgaaagaattgattttggttaaaa 19877487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 29716674 - 29716717
Alignment:
Q  86 gattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||| |||| | ||||||||||||||||||||||||||    
T  29716674 gattttgataaaattgaatttgagagaattgattttggttaaaa 29716717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 44939376 - 44939447
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| |||| ||||| | || |||||||||||||| |||| | |||||| |||||||||||| ||||||    
T  44939376 tgtgtttggtatagcggtggcgataattgattttgatagaattgaatttgagtgaattgattttgattaaaa 44939447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 21225110 - 21225060
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||| |  ||| |||| ||||||||||||||||||||||||||||    
T  21225110 gagaattgatctctatagaattgagtttgagagaattgattttggttaaaa 21225060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 16246056 - 16246125
Alignment:
Q  58 tgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||||| || ||||||||| |||||||||| || ||| |||| |||||||||  ||||||||| |||||||    
T  16246056 tgtgtttggtttggcggtagcgagaattgatattaatagaattgagtttgaga--attgattttagttaaaa 16246125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 23207052 - 23207100
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    ||||||||||||||||||| | ||||  | |||||||||||||||||||    
T  23207052 aattgattttgatataattgattttgttataattgattttggttaaaaa 23207100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 8596 - 8519
Alignment:
Q  52 taagtatgtgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| ||||||| |||||||||| || | |||||||||||||| |||| ||||||| | ||||||||||||||||||    
T  8596 taagtgtgtgtttggtatggcggtgggaataattgattttgatagaattgagtttgatataattgattttggttaaaa 8519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 253248 - 253199
Alignment:
Q  79 gagaattgattttgatataattaagtttgagagaattgattttggttaaa 128  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  253248 gagaattgattttgatagaattgagtttgagagaattgattttggttaaa 253199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 29107 - 29154
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  29107 aattgattttgatagaattaagtttgaaagaattgattttggttaaaa 29154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0983 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0983
Description:

Target: scaffold0983; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 129
Target Start/End: Original strand, 2230 - 2299
Alignment:
Q  60 tgtttagtatggcggtagggagaattgattttgatataattaagtttgagagaattgattttggttaaaa 129  Q
    ||||| |||||||||| | || |||||||||||| | |||| ||||||| | ||||||||||||||||||    
T  2230 tgtttggtatggcggtggcgaaaattgattttgacagaattgagtttgacataattgattttggttaaaa 2299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 2011 - 2059
Alignment:
Q  82 aattgattttgatataattaagtttgagagaattgattttggttaaaaa 130  Q
    |||||||||||||| |||| ||||||| |||||||||||||||| ||||    
T  2011 aattgattttgatagaattgagtttgaaagaattgattttggttcaaaa 2059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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