View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_42 (Length: 204)
Name: NF15945_low_42
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 24 - 188
Target Start/End: Original strand, 55824974 - 55825138
Alignment:
| Q |
24 |
gctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55824974 |
gctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttc |
55825073 |
T |
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| Q |
124 |
aattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagcctttg |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55825074 |
aattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagcctttg |
55825138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 24 - 188
Target Start/End: Complemental strand, 56150007 - 56149843
Alignment:
| Q |
24 |
gctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttc |
123 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56150007 |
gctttcagttctagatgctcaacatcgaagaattatctgaacaatttgatatcggtgaagatgtactatcaggttgacgacatctccttaattcacgttc |
56149908 |
T |
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| Q |
124 |
aattgccacttttgcagaattttccatctctgcataccacaaagccgtctccattgcagcctttg |
188 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56149907 |
aattgccacttttgcagaatttgccatctctgcataccacaaagccgtctccattgcagcctttg |
56149843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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