View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15945_low_8 (Length: 451)
Name: NF15945_low_8
Description: NF15945
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15945_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 436
Target Start/End: Original strand, 45043071 - 45043496
Alignment:
| Q |
12 |
atcatcatgaatagattttggcttccttaatccaacagtcctctgcacatgaaaagtccaagacatgtttagnnnnnnnggcaata-cattgaggctatg |
110 |
Q |
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| T |
45043071 |
atcatcatgaatagattttggcttccttaatccaacactcctctgcacatgaaaagtccaagacatgtttagaaaaaaaggcaataacattgaggctatg |
45043170 |
T |
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| Q |
111 |
aagtacatgagatcgagaagtcggttgacaattttatagaagaacactcaagtcttggattatnnnnnnntgtgataaaccaaaatgagacacttcggat |
210 |
Q |
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| T |
45043171 |
aagtacatgagatcgagaagtcggttgacaattttataaaagaacactcaagtcttggatgataaaaaaatgtgataaaccaaaatgagacacttcggat |
45043270 |
T |
|
| Q |
211 |
gataattacctcggatgcataggaaccatcatcataaagatgggatgaagcagtaacacccctctggttcattatttcaaaaggcatcctatagcttagc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45043271 |
gataattacctcggatgcataggaaccatcatcataaagatgggatgaagcagtaacacccctctggttcattatttcaaaaggcatcctatagcttagc |
45043370 |
T |
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| Q |
311 |
cagaaattatagaaagagaaatgatacagaattatatcctcacttgctagctttgttgaactctactcatcatcatctgttgaaaaattcaaggtcacat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45043371 |
cagaaattatagaaagagaaatgatacagaattatatcctcacttgctagctttgttgaactctactcatcatcatctgttgaaaaattcaaggtcacat |
45043470 |
T |
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| Q |
411 |
gctctaagaaggaaagaacagaaaac |
436 |
Q |
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| T |
45043471 |
gctttaagaaggaaagaacagaaaac |
45043496 |
T |
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