View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15946_high_10 (Length: 258)

Name: NF15946_high_10
Description: NF15946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15946_high_10
NF15946_high_10
[»] chr3 (8 HSPs)
chr3 (53-244)||(20387209-20387399)
chr3 (53-244)||(20386825-20387015)
chr3 (1-244)||(20386003-20386247)
chr3 (53-244)||(20386441-20386631)
chr3 (75-235)||(20387671-20387839)
chr3 (3-39)||(20386381-20386417)
chr3 (3-39)||(20386765-20386801)
chr3 (3-39)||(20387149-20387185)


Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 20387209 - 20387399
Alignment:
Q  53 ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcatgatttataatcggtg 152  Q
    |||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20387209 ctttctttcgaagaagcatggttttt-gttttatacataacccagtgatgagatctcccgaaaattgatttgataccgtatgcatgatttataatcggtg 20387307  T
Q  153 acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtat 244  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20387308 acgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtat 20387399  T

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Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 20386825 - 20387015
Alignment:
Q  53 ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcatgatttataatcggtg 152  Q
    |||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20386825 ctttctttcgaagaagcatggtttt-tgctttatacataacccagggatgagatctcccgaaaattgatttgataccgtatgcatgatttataatcggtg 20386923  T
Q  153 acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtat 244  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20386924 acgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggttgatcggattgatttcttgttcggaactggattgtat 20387015  T

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Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 20386003 - 20386247
Alignment:
Q  1 tgttcctaattttatgttctaatttgtggtgctagggtgnnnnnnnnncttc--ctttctattgaagaagcatggttttttgctttatacataacccagt 98  Q
    |||||||| ||||||||||||||||||||||||||||||          ||   ||||||||||||||||||||||||| ||||||||||||||||||||    
T  20386003 tgttcctatttttatgttctaatttgtggtgctagggtgttatcttttttttttctttctattgaagaagcatggtttt-tgctttatacataacccagt 20386101  T
Q  99 gatgagatctcccgaaaattgatttgataccgaatgcatgatttataatcggtgacgattcaagaatggatgatcccaatacacaacagattggtactag 198  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||||    
T  20386102 gatgtgatctcccgaaaattgatttgatacagtatgcatgatttataatctgtgatgattcaagaatggaatatcccaatacacaacagattggtactag 20386201  T
Q  199 tttgttggtagatcggattgatttcttgttcggaactggattgtat 244  Q
    ||||||||| || |||||||||||||||||||||||||||||||||    
T  20386202 tttgttggttgaccggattgatttcttgttcggaactggattgtat 20386247  T

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Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 53 - 244
Target Start/End: Original strand, 20386441 - 20386631
Alignment:
Q  53 ctttctattgaagaagcatggttttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcatgatttataatcggtg 152  Q
    |||||| | |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||| |||    
T  20386441 ctttctttcgaagaagcatggtttt-tgctttatacataacccagggatgagatctcccgaaaattgatttgatacagtatgcatgatttataatctgtg 20386539  T
Q  153 acgattcaagaatggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaactggattgtat 244  Q
    | ||||||||||||||  ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  20386540 atgattcaagaatggaatatcccaatacacaacagattggtactagtttgttggttgaccggattgatttcttgttcggaactggattgtat 20386631  T

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Target: chr3; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 235
Target Start/End: Original strand, 20387671 - 20387839
Alignment:
Q  75 tttttgctttatacataacccagtgatgagatctcccgaaaattgatttgataccgaatgcatga---------tttataatcggtgacgattcaagaat 165  Q
    |||||||||| ||||||||||| | ||||||| |||| |||||||||| ||| ||| ||||||||         ||||||||||||||||||||||||||    
T  20387671 tttttgctttttacataacccattaatgagatatcccaaaaattgattggatgccgtatgcatgatttatatgatttataatcggtgacgattcaagaat 20387770  T
Q  166 ggatgatcccaatacacaacagattggtactagtttgttggtagatcggattgatttcttgttcggaact 235  Q
    |||| |||||||||||||||| |||| |||| |||||||| |  |||||||  |||||||||| ||||||    
T  20387771 ggat-atcccaatacacaacaaattgatactcgtttgttgttttatcggataaatttcttgtttggaact 20387839  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 20386381 - 20386417
Alignment:
Q  3 ttcctaattttatgttctaatttgtggtgctagggtg 39  Q
    |||||| ||||||||||||||||||||||||||||||    
T  20386381 ttcctatttttatgttctaatttgtggtgctagggtg 20386417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 20386765 - 20386801
Alignment:
Q  3 ttcctaattttatgttctaatttgtggtgctagggtg 39  Q
    |||||| ||||||||||||||||||||||||||||||    
T  20386765 ttcctatttttatgttctaatttgtggtgctagggtg 20386801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 20387149 - 20387185
Alignment:
Q  3 ttcctaattttatgttctaatttgtggtgctagggtg 39  Q
    |||||| ||||||||||||||||||||||||||||||    
T  20387149 ttcctatttttatgttctaatttgtggtgctagggtg 20387185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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