View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15946_high_3 (Length: 445)
Name: NF15946_high_3
Description: NF15946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15946_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 222 - 427
Target Start/End: Complemental strand, 5374850 - 5374645
Alignment:
| Q |
222 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
321 |
Q |
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| T |
5374850 |
aaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaaaattgttgtttatttcaattgattaaaagcaacacataatagaa |
5374751 |
T |
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| Q |
322 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
421 |
Q |
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| T |
5374750 |
caaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaactgagaattgacggtga |
5374651 |
T |
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| Q |
422 |
gaccta |
427 |
Q |
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| |||| |
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| T |
5374650 |
ggccta |
5374645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 25 - 224
Target Start/End: Complemental strand, 5375538 - 5375341
Alignment:
| Q |
25 |
tgtttgggaaagcgtatggaaacacattatatgacatctccatgagctgtttacagatttatttcataaaagccctctgggatagcttatttaatatagc |
124 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5375538 |
tgtttgagaaagcgtatggaaacacattatatgacatctccatgagctgtttacagatttatttcataa--gccctctgggatagcttatttaatatagc |
5375441 |
T |
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| Q |
125 |
cctctgggatatatttctttgtagcattccattagataaggtccataccttnnnnnnngaaaacataagaagtcagaaacaagaactgtgaattggaaaa |
224 |
Q |
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| T |
5375440 |
cgtctgggatatatttctttgtagcattccattagataaggtccataccttaaaaaaagaaaacataagaagtcagaaacaagaactgtgaattggaaaa |
5375341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 221 - 383
Target Start/End: Complemental strand, 5393078 - 5392916
Alignment:
| Q |
221 |
aaaagattttgctttatcaatttcattttgactatctactctcttcatattttgtaa-aattgttgtttatttcaattgattaaaagcaacacataatag |
319 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||| ||||||| ||||||| |
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| T |
5393078 |
aaaagattttgctttatcaatttcattttgattatctactctcttcatatttttttagaattgttgtttatttcaattgattgaaagcaatgcataatat |
5392979 |
T |
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| Q |
320 |
aacaaaataaatatagaatttgaatgtactaaatattgtgcacaagtatttgaatcaaatgtct |
383 |
Q |
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| T |
5392978 |
aacaaaataaatatagaatttgaatgta-aaaatattgtgcacaagtatttgaataaaatgtct |
5392916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 134 - 175
Target Start/End: Original strand, 5370346 - 5370387
Alignment:
| Q |
134 |
tatatttctttgtagcattccattagataaggtccatacctt |
175 |
Q |
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| T |
5370346 |
tatatttctttgtagcattccattagataaggtccatacctt |
5370387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 261
Target Start/End: Original strand, 5354617 - 5354656
Alignment:
| Q |
222 |
aaagattttgctttatcaatttcattttgactatctactc |
261 |
Q |
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| T |
5354617 |
aaagattttgctttatcaatttcattttgacaatctactc |
5354656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 55 - 114
Target Start/End: Original strand, 5369691 - 5369747
Alignment:
| Q |
55 |
atgacatctccatgagctgtttacagatttatttcataaaagccctctgggatagcttat |
114 |
Q |
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|||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
5369691 |
atgacatctccatgagctgttttcagctttatttcataa---gcctctgggatagcttat |
5369747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 350 - 404
Target Start/End: Original strand, 5354681 - 5354735
Alignment:
| Q |
350 |
aaatattgtgcacaagtatttgaatcaaatgtctttgtcgaatctaacccgaaaa |
404 |
Q |
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|||||||||||||||||||||||||| ||| |||||| |||| ||||| ||||| |
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| T |
5354681 |
aaatattgtgcacaagtatttgaatcgtatgcctttgttgaatataacctgaaaa |
5354735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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