View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15946_low_1 (Length: 628)
Name: NF15946_low_1
Description: NF15946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15946_low_1 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 573; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 14 - 613
Target Start/End: Complemental strand, 36468297 - 36467698
Alignment:
| Q |
14 |
gttacattatagaagacgaaatctgcaaggaggataaatgnnnnnnnnngaatcgggaaaatttattaagccaaggaggtgaaagaaacaccaaacgttg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36468297 |
gttacattatagaagacgaaatctgcaaggaggataaatgtttttttttgaatcgggaaaatttattaagccaaggaggtgaaagaaacaccaaacgttg |
36468198 |
T |
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| Q |
114 |
aaccacaaagagataattacaaaggtgtcgtatatatgcggaacacctcaatggtggaacgccaaaaaactccgtatgtaaaagtggaaccttaatccct |
213 |
Q |
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| T |
36468197 |
aaccacaaagagataattacaaaggtgtcgtatatatgcggaacacctcaatggtggaacgccaaaaaactccgtatgtaaaagtggaaccttaatccct |
36468098 |
T |
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| Q |
214 |
ttacccttatggcactaaagacctctaacagcacaatgccaaggccaatcactcctaactatgattgtgaaccaaagaaaaagtccctagcatactgtca |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36468097 |
ttacccttatggcactaaagacctctaacagcacaatgccaaggccaatcactcctaactatgattgtgaaccaaagaaaaagtccctagcatactgtca |
36467998 |
T |
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| Q |
314 |
cgccaaaaccgaacatgcagcagactggaaaaactgcacagcctacacccgcaaaaaccagaagacagcatcagcaaatcgcgcagagccagaccacaga |
413 |
Q |
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| T |
36467997 |
cgccaaaaccgaacatgcagcagactggaaaaactgcacagcctacacccgcaaaaaccagaagacagcatcagcaaatcgcgcagagccagaccacaga |
36467898 |
T |
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| Q |
414 |
tccaagtagaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaatgcattcttctttttgcatactaattgacgcataat |
513 |
Q |
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| T |
36467897 |
tccaagtagaaaacgcacacaaccaatccacataaccatacagcagacatccaaatagttacaatgcattcttctttttgcatactaattgacgcataat |
36467798 |
T |
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| Q |
514 |
aatgttcccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaaacaatacataaaactccgtagcttcatcctctgtg |
613 |
Q |
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| T |
36467797 |
aatgttcccattagaataacgtttcacatcatcctttcttacttcaaacccgtggtattttgcaaacaatacataaaactccgtagcttcatcctctgtg |
36467698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 120 - 161
Target Start/End: Original strand, 10681870 - 10681911
Alignment:
| Q |
120 |
aaagagataattacaaaggtgtcgtatatatgcggaacacct |
161 |
Q |
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| T |
10681870 |
aaagagaaaaatacaaaggtgtcgtatatatgcggaacacct |
10681911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 162
Target Start/End: Complemental strand, 35692016 - 35691983
Alignment:
| Q |
129 |
attacaaaggtgtcgtatatatgcggaacacctc |
162 |
Q |
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| T |
35692016 |
attacaaaggtgtcgtatatatacggaacacctc |
35691983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 63 - 180
Target Start/End: Original strand, 40045276 - 40045393
Alignment:
| Q |
63 |
gaatcgggaaaatttattaagccaaggaggtgaaagaaacaccaaacgttgaaccacaaagagataat-tacaaaggtgtcgtatatatgcggaacacct |
161 |
Q |
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| T |
40045276 |
gaatcggcaaaatttatta-gccaagaaggtggaagaaccaccaaaacttggaacacaaagagataaaatagaaaggtgttgtatatatgttgaacacct |
40045374 |
T |
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| Q |
162 |
caatggtggaacgccaaaa |
180 |
Q |
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| T |
40045375 |
caatggtggcacaccaaaa |
40045393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 136
Target Start/End: Complemental strand, 32010393 - 32010320
Alignment:
| Q |
64 |
aatcgggaaaatttattaagccaaggaggtgaaagaaacacca-aacgttgaaccacaaagagataattacaaa |
136 |
Q |
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| T |
32010393 |
aatcggcaaaatttattaagccaaggaggtgaaaggaacaccagaaccttggatcacaaagagataaatacaaa |
32010320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 71 - 159
Target Start/End: Original strand, 44768106 - 44768193
Alignment:
| Q |
71 |
aaaatttattaagccaaggaggtgaaagaaacaccaaacgttgaaccacaaagagataattacaaaggtgtcgtatatatgcggaacac |
159 |
Q |
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| T |
44768106 |
aaaatttattaagc-aagcaagtgaaagaatcacataagcttgaatcacaaagagaaaaatacaaaggtgtcgtatatatgcggaacac |
44768193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 161
Target Start/End: Original strand, 45903 - 45992
Alignment:
| Q |
71 |
aaaatttattaagccaaggaggtgaaagaaacaccaaacgttgaaccacaaagagataattacaaaggtgtcgtatatatgcggaacacct |
161 |
Q |
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| T |
45903 |
aaaatttattaagccaagaaagtgaaaccatcaccaaaacttggaccacaaaggga-aattacaaaggtgccgtatatatgcagaacacct |
45992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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