View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15946_low_2 (Length: 580)
Name: NF15946_low_2
Description: NF15946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15946_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 280 - 564
Target Start/End: Complemental strand, 29800161 - 29799877
Alignment:
| Q |
280 |
tagtttcttgccagtaaaacgaaaagacgtatagtgctcatctcaatgatagttttaataataaatttgatatattttagaaatgatgaggtgttttcct |
379 |
Q |
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| T |
29800161 |
tagtttcttgccagtaaaacgaaaagatgtatagtgctcatctcaatgatagttttaataataaatttgatatattttagaaatgatgtggtgttttcct |
29800062 |
T |
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| Q |
380 |
gcattaactaatatatatcttcaatgtgtttgttgtccaaatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatg |
479 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29800061 |
gcattaactaatatatatcttcaatgtgtttgttgtccaaatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatg |
29799962 |
T |
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| Q |
480 |
ttcaaaggcaatctagagaagacattaaacttgataatctaacaattcctaatgggaccaatatgtggatcgacgttgttgcaat |
564 |
Q |
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| T |
29799961 |
ttcaaaggcaatctagagaagacattaaacttgataatctaacaattcctaatgggaccaatatgtggatcgacgttgttgcaat |
29799877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 29800445 - 29800215
Alignment:
| Q |
7 |
tcgaagaatatatggtggtgatttccgcccactccacagccataaaagcaaagagaagaatctgaattgataataccacgttga----------tctttg |
96 |
Q |
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| T |
29800445 |
tcgaagaaaaaatggtggtgatttccgcccactccacagccataaaagcaaagagaagaatctgaattgataataccacgttgacacacgttgatctttg |
29800346 |
T |
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| Q |
97 |
ttggaagtctattttgaattagcctccaagcaaatgatgacaacttaagagaaacttatttgttccaagtcaagttgtgacgaggtaaaggctcgttgtc |
196 |
Q |
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| T |
29800345 |
ttggaagtctattttgaattagcctccaaacaaatgatgacaacttaagagaaacttatttgttccaagtcaagttgtgacgaggtaaaggctcattgtc |
29800246 |
T |
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| Q |
197 |
aaaaagcatgtgataaactcctttggtataa |
227 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
29800245 |
aaaaagcatgtgataaactcctttggtataa |
29800215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 419 - 549
Target Start/End: Complemental strand, 45420267 - 45420137
Alignment:
| Q |
419 |
aatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatc |
518 |
Q |
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||||| |||||||| |||||||||||||||| | | || || |||||| ||||||||||||| ||||| ||| | |||||||||||| || ||||| || |
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| T |
45420267 |
aatatgcagatgaaatgggtgatgaatgaagttctaagactatacccaccagcaccaaatgtgcaaagacaagcaagagaagacattcaagttgatgatg |
45420168 |
T |
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| Q |
519 |
taacaattcctaatgggaccaatatgtggat |
549 |
Q |
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| T |
45420167 |
taacagtgcctaatggaaccaacatgtggat |
45420137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 425 - 549
Target Start/End: Complemental strand, 45410952 - 45410828
Alignment:
| Q |
425 |
cagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatctaacaa |
524 |
Q |
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|||||||| || ||||||||||||| | | || || |||||| ||||||||||||| ||||| ||| | |||||||| ||| || ||||| || ||||| |
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| T |
45410952 |
cagatgaaatgtgtgatgaatgaagttctaagactatacccaccagcaccaaatgtgcaaagacaagcaagagaagatattcaagttgatgatgtaacag |
45410853 |
T |
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| Q |
525 |
ttcctaatgggaccaatatgtggat |
549 |
Q |
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| T |
45410852 |
tgcctaatggaacaaacatgtggat |
45410828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 419 - 549
Target Start/End: Complemental strand, 26835458 - 26835328
Alignment:
| Q |
419 |
aatattcagatgaagtgggtgatgaatgaagctttgaggctctacccaacagcaccaaatgttcaaaggcaatctagagaagacattaaacttgataatc |
518 |
Q |
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||||| |||||||| |||||||||||||||| ||| || || |||||| || |||||||||| ||||| ||| | ||||||||||||||| |||||||| |
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| T |
26835458 |
aatatgcagatgaaatgggtgatgaatgaagttttaagactatacccaccatcaccaaatgtgcaaagacaaacaagagaagacattaaagttgataatg |
26835359 |
T |
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| Q |
519 |
taacaattcctaatgggaccaatatgtggat |
549 |
Q |
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||||| | |||||||| ||||| |||||||| |
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| T |
26835358 |
taacagtgcctaatggaaccaacatgtggat |
26835328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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