View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15946_low_4 (Length: 404)
Name: NF15946_low_4
Description: NF15946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15946_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 33196280 - 33196653
Alignment:
| Q |
17 |
acaaacaggaattttaagttggcttctaggcttttgggattggattccaagcttgagaaaagtttactcattccattcagagaaatcaaggtaaacaaac |
116 |
Q |
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| T |
33196280 |
acaaacaggaattttaagttggcttctaggcttttgggattggattccaagcttgagaaaagtttacttattccattcagagaaatcaaggtaaacaaac |
33196379 |
T |
|
| Q |
117 |
aaaattatttctctttgttctagcaaatttgtttactaggcttgttttgtgtgttctgaatgatggtttcctgaaaattcaggttgaatgtaccattcct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33196380 |
aaaattatttctctttgttctagcaaatttgtttactaggcttgttttgtgtgttctgaatgatggtgtcctgaaaattcaggttgaatgtaccattcct |
33196479 |
T |
|
| Q |
217 |
aaagatgacggcacgttgcaatcgtatattggattcagagttcaacatgataatgctagaggccctatgaaaggagggatcagataccatcctgaggtta |
316 |
Q |
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| T |
33196480 |
aaagatgacggcacgttgcaatcttatattggattcagagttcaacatgataatgctagaggccctatgaaaggagggatcagataccatcctgaggtta |
33196579 |
T |
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| Q |
317 |
tttatattctaacactaatctcaattactaagtggcatgacatagtgacattactgtcgcgatacactgagatt |
390 |
Q |
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| T |
33196580 |
tttatattctaacactaatctcaattaccaagtggcatggcatagtgacattactgtcgcgatacactgagatt |
33196653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 188 - 326
Target Start/End: Original strand, 10150517 - 10150655
Alignment:
| Q |
188 |
tgaaaattcaggttgaatgtaccattcctaaagatgacggcacgttgcaatcgtatattggattcagagttcaacatgataatgctagaggccctatgaa |
287 |
Q |
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| T |
10150517 |
tgaaaattcaggtggagtgtagcatccctaaagatgatggaaccttggctacatatgttggattcagaattcaacatgataactctagaggccctatgaa |
10150616 |
T |
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| Q |
288 |
aggagggatcagataccatcctgaggttatttatattct |
326 |
Q |
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| T |
10150617 |
aggagggatcagataccatcctgaggttatttatattct |
10150655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 110
Target Start/End: Original strand, 10150093 - 10150180
Alignment:
| Q |
23 |
aggaattttaagttggcttctaggcttttgggattggattccaagcttgagaaaagtttactcattccattcagagaaatcaaggtaa |
110 |
Q |
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| T |
10150093 |
aggaactttaagttggcctctaggcttttgggattggattcaaagattgagaaaagtttgttgattccattcagagaaattaaggtaa |
10150180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 41209437 - 41209483
Alignment:
| Q |
59 |
gattccaagcttgagaaaagtttactcattccattcagagaaatcaa |
105 |
Q |
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| T |
41209437 |
gattccaagcttgagaagagtcttctcattccatttagagaaatcaa |
41209483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 4275116 - 4275064
Alignment:
| Q |
56 |
ttggattccaagcttgagaaaagtttactcattccattcagagaaatcaaggt |
108 |
Q |
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| T |
4275116 |
ttggattccaaacttgagaaaagccttctcattccttacagagaaatcaaggt |
4275064 |
T |
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