View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15946_low_7 (Length: 306)
Name: NF15946_low_7
Description: NF15946
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15946_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 18 - 291
Target Start/End: Original strand, 10967920 - 10968193
Alignment:
| Q |
18 |
acttttacttcacttcaggtgctattgttttagcccttttccttcactatccaactattcaccaaaatgctacaaaacccattaaggatctccatacgcc |
117 |
Q |
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| T |
10967920 |
acttttacttcacttcaggtgctattgttttagcccttttccttcactatccaactattcaccaaaatgctacaaaacccattaaggatctccatacgcc |
10968019 |
T |
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| Q |
118 |
tcttcgaattcctgggttaccaaagaatatttcaacagatgattaccctgatgaagccgagtttttccttgaatcggcaaaaactatgaggcaatgtgat |
217 |
Q |
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| T |
10968020 |
tcttcgaattcctgggttaccaaaaaatatttcaacagatgattaccctgatgaagccgagtttttccttgaatcggcaaaaactatgaggcaatgtgat |
10968119 |
T |
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| Q |
218 |
gggattattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatttattcc |
291 |
Q |
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| T |
10968120 |
ggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatatattcc |
10968193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 10981843 - 10981993
Alignment:
| Q |
18 |
acttttacttcacttcaggtgctattgttttagcccttttccttcactatccaactattcaccaaaatgctacaaaacccattaaggatctccatacgcc |
117 |
Q |
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| T |
10981843 |
acttttattacacttcaggtgctatctttgtagccactttccttcattttccaattgtttatgaaaatgctacaaaacctattaaggatcttcatatgcc |
10981942 |
T |
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| Q |
118 |
tcttcgaattcctgggttaccaaagaatatttcaacagatgattaccctga |
168 |
Q |
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| T |
10981943 |
tcttcaaattccagggttaccaaagagtctttcaacagatgattaccctga |
10981993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 10982052 - 10982146
Alignment:
| Q |
197 |
aaaactatgaggcaatgtgatgggattattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatttattcc |
291 |
Q |
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||||||| |||| |||||||||||||||| |||||||||||||||| |||||| |||| ||| | |||||||||||||||||||||||||||||| |
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| T |
10982052 |
aaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagctttgaatgaaggattatttattcc |
10982146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 174
Target Start/End: Original strand, 11002113 - 11002232
Alignment:
| Q |
55 |
tttccttcactatccaactattcaccaaaatgctacaaaacccattaaggatctccatacgcctcttcgaattcctgggttaccaaagaatatttcaaca |
154 |
Q |
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| T |
11002113 |
tttcctttactttccaaccattcaccaaaaagctacaaaacccatcaaggatcttcatatgcctcttaaaattcccgggttaccaaagaacttttcgaca |
11002212 |
T |
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| Q |
155 |
gatgattaccctgatgaagc |
174 |
Q |
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| T |
11002213 |
gacgattaccccgatgaagc |
11002232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 11002262 - 11002361
Alignment:
| Q |
180 |
ttttccttgaatcggcaaaaactatgaggcaatgtgatgggattattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaagg |
279 |
Q |
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|||| ||||| ||||| ||||| |||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||| ||||| |||||||||||| |
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| T |
11002262 |
ttttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtttgaatgaagg |
11002361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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