View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15947_high_3 (Length: 279)
Name: NF15947_high_3
Description: NF15947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15947_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 260
Target Start/End: Original strand, 12800966 - 12801213
Alignment:
| Q |
13 |
atcatcacccaacagctttttccattgttgatcttcaaaaaggttgatttccttgtgttgattccaatttaggatccatgttgttcattgcactcatgga |
112 |
Q |
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| T |
12800966 |
atcatcacccaacagctttttccattgttgatcttcaaaaaggttgatttccttgtgttgattccaatttaggatccatgttgttcattgcactcatgga |
12801065 |
T |
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| Q |
113 |
gtgtagttgctgctctctttgtgaaaatcctccaccacttgtagtattcatatttctcaccattcctccaacaccaagaaaatccaaagtcaatttatct |
212 |
Q |
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| T |
12801066 |
gtgtagttgctgttctctttgtgaaaatcctccaccacttgtagtattcatatttctcaccattcctccaacaccaagaaaatccaaagtcaatttatct |
12801165 |
T |
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| Q |
213 |
gatcctccaaagcacaaattaccaactagactttgttgtgacgatgac |
260 |
Q |
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| T |
12801166 |
gatcctccaaagcacaaattaccaactagactttgttgtgacgatgac |
12801213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 223
Target Start/End: Complemental strand, 42289627 - 42289564
Alignment:
| Q |
160 |
tcatatttctcaccattcctccaacaccaagaaaatccaaagtcaatttatctgatcctccaaa |
223 |
Q |
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| T |
42289627 |
tcatatttctgaccattcctccaacaccaagaaaatctaaagttaacttatcagatccaccaaa |
42289564 |
T |
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