View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15947_low_1 (Length: 409)
Name: NF15947_low_1
Description: NF15947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15947_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 395
Target Start/End: Complemental strand, 7896416 - 7896036
Alignment:
| Q |
14 |
gaagtatccaaattgttctcaccaagaagccaaaaagcacaagccataaactttgacaaatgggggaactagtaagcaactaaattgatattcaaactac |
113 |
Q |
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| T |
7896416 |
gaagtatccaaattgttctcaccaagaggccaaaa-gcacaagccataaactttgacaaatgggggaactagtaggcaactaaattgatattcaaactac |
7896318 |
T |
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| Q |
114 |
agattcatcctttgggtggcacaacatctc--ctgnnnnnnnn-ctctctagactttaggtagcaaggttttgatctcaatgaagttatcaaagtcaggc |
210 |
Q |
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| T |
7896317 |
agatttatcctttgggtggcacaacatctcacctgtttttttttctctctagactttaggtagcaaggttttgatctcaatgaagttatcaaagtcaagc |
7896218 |
T |
|
| Q |
211 |
aatattcatacatcattatttttaacatttctaccagcatcaatttttcaaaataattaatgtcaagctggaacagcagagcttctccatccttggtaat |
310 |
Q |
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| T |
7896217 |
aat---catacatcattatttttaacatttctaccagcatcaatttttcaaaataattaatgtcaagctggaacagcagagcttctccatccttggtaat |
7896121 |
T |
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| Q |
311 |
ttatccactaataattagttctaaccaaagagacaattggtaaacagagaaggaaacaaaaacacaaaccaattatagatgcatt |
395 |
Q |
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| T |
7896120 |
ttatccactaataattagttctaaccaaagagacaattggtaaacagagaaggaaacaaaaacagaaaccaattatagatgcatt |
7896036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 7975610 - 7975661
Alignment:
| Q |
306 |
gtaatttatccactaataattagttctaaccaaagagacaattggtaaacaga |
358 |
Q |
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| T |
7975610 |
gtaatttatccactaataattagttatagccaaagagac-attgggaaacaga |
7975661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 310
Target Start/End: Original strand, 7974439 - 7974511
Alignment:
| Q |
238 |
tttctaccagcatcaatttttcaaaataattaatgtcaagctggaacagcagagcttctccatccttggtaat |
310 |
Q |
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| T |
7974439 |
tttctaccagtattgatattgcaaaataattaatgttaggctggaactgcagagcttcttcacccgtggtaat |
7974511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 156 - 238
Target Start/End: Complemental strand, 31211741 - 31211661
Alignment:
| Q |
156 |
tctctagactttaggtagcaaggttttga-tctcaatgaagttatcaaagtcaggcaatattcatacatcattatttttaacat |
238 |
Q |
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| T |
31211741 |
tctctaaactttaggtagcaaggctttgaatctcaacgaagttatcaaagtcaagcaat---catacatcattatttttaacat |
31211661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 308
Target Start/End: Complemental strand, 31211648 - 31211568
Alignment:
| Q |
231 |
tttaacatttctaccagcatcaatttttc---aaaataattaatgtcaagctggaacagcagagcttctccatccttggta |
308 |
Q |
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| T |
31211648 |
tttagcatttctaccagcatcattattactacaaaataactaatgtcaagctggaacagcagagattctccgttcttggta |
31211568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 31211851 - 31211803
Alignment:
| Q |
14 |
gaagtatccaaattgttctcaccaagaagccaaaaagcacaagccataaa |
63 |
Q |
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| T |
31211851 |
gaagtatccaaattgttctcaccaagaggcc-aggagcacaagccataaa |
31211803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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