View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15947_low_5 (Length: 248)

Name: NF15947_low_5
Description: NF15947
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15947_low_5
NF15947_low_5
[»] chr4 (15 HSPs)
chr4 (1-154)||(5050447-5050599)
chr4 (62-154)||(3067600-3067692)
chr4 (27-154)||(45891817-45891945)
chr4 (67-153)||(52803243-52803329)
chr4 (58-154)||(4059100-4059196)
chr4 (35-154)||(14295046-14295165)
chr4 (35-154)||(14311095-14311214)
chr4 (35-154)||(14313296-14313415)
chr4 (56-153)||(18371163-18371260)
chr4 (58-153)||(31040304-31040400)
chr4 (31-88)||(37861280-37861337)
chr4 (85-154)||(43967986-43968055)
chr4 (102-154)||(36622116-36622168)
chr4 (31-88)||(46963835-46963892)
chr4 (218-246)||(5050166-5050194)
[»] scaffold0192 (1 HSPs)
scaffold0192 (27-154)||(13412-13539)
[»] chr3 (14 HSPs)
chr3 (27-154)||(41242138-41242265)
chr3 (56-154)||(16053084-16053182)
chr3 (56-146)||(16037596-16037686)
chr3 (56-146)||(16041152-16041242)
chr3 (28-153)||(17517840-17517965)
chr3 (34-147)||(11076905-11077018)
chr3 (56-154)||(31229711-31229809)
chr3 (56-120)||(28389449-28389513)
chr3 (42-152)||(39933360-39933469)
chr3 (102-153)||(37820821-37820872)
chr3 (100-153)||(50744744-50744797)
chr3 (31-82)||(4127359-4127410)
chr3 (31-82)||(50129155-50129206)
chr3 (31-82)||(51390374-51390425)
[»] chr6 (6 HSPs)
chr6 (27-153)||(12185666-12185792)
chr6 (27-153)||(9456168-9456294)
chr6 (56-154)||(3441206-3441304)
chr6 (56-154)||(25070374-25070472)
chr6 (31-153)||(10068206-10068326)
chr6 (104-154)||(10483607-10483657)
[»] chr5 (6 HSPs)
chr5 (31-152)||(35075870-35075991)
chr5 (56-154)||(39743465-39743563)
chr5 (45-152)||(7802007-7802113)
chr5 (30-87)||(5735964-5736021)
chr5 (80-154)||(31559096-31559170)
chr5 (27-88)||(31558176-31558237)
[»] chr8 (5 HSPs)
chr8 (57-154)||(25267019-25267116)
chr8 (40-137)||(39907977-39908074)
chr8 (61-153)||(2233861-2233953)
chr8 (58-130)||(32162808-32162880)
chr8 (34-90)||(11190545-11190601)
[»] chr7 (7 HSPs)
chr7 (68-153)||(33902215-33902300)
chr7 (27-153)||(24211286-24211411)
chr7 (102-152)||(46603750-46603800)
chr7 (67-153)||(9603492-9603578)
chr7 (67-153)||(9831063-9831149)
chr7 (105-153)||(40291213-40291261)
chr7 (105-153)||(45996496-45996544)
[»] scaffold0402 (1 HSPs)
scaffold0402 (28-154)||(2999-3123)
[»] chr1 (8 HSPs)
chr1 (28-154)||(19339936-19340060)
chr1 (57-154)||(46298562-46298659)
chr1 (69-153)||(49423364-49423448)
chr1 (20-147)||(31501006-31501133)
chr1 (50-153)||(23392696-23392800)
chr1 (56-153)||(25808472-25808569)
chr1 (31-82)||(34967742-34967793)
chr1 (33-90)||(47449243-47449300)
[»] chr2 (8 HSPs)
chr2 (27-153)||(11152212-11152344)
chr2 (63-153)||(2126179-2126269)
chr2 (31-147)||(5578025-5578141)
chr2 (106-154)||(15081331-15081379)
chr2 (31-68)||(4762065-4762102)
chr2 (31-80)||(11252647-11252696)
chr2 (31-95)||(2674359-2674423)
chr2 (58-154)||(11617277-11617373)
[»] scaffold1786 (1 HSPs)
scaffold1786 (50-143)||(398-491)
[»] scaffold0007 (1 HSPs)
scaffold0007 (31-150)||(176183-176302)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 5050599 - 5050447
Alignment:
Q  1 acattaaaaaattaaaatcaaaagaagtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaa 100  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||  |||||    
T  5050599 acattcaaaaattaaaatcaaaaga-gtagtgttaacttgtgcccttatggcacaagttaagaatctaaaaatagaattaaatcataaattatgcctcaa 5050501  T
Q  101 gaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5050500 gaagataagattttaaatttctaaaatattaaatgcacaattttcaataaaatg 5050447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 3067600 - 3067692
Alignment:
Q  62 gaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    ||||||||||||  |||||||||||||||||| |||  | ||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  3067600 gaatctaaaaatgaaattaaatcataaattatttcttgaaaagataagattttaaatttctaaaatattgaatgcacaatttccaacaaaatg 3067692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 45891945 - 45891817
Alignment:
Q  27 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatc-tcaagaagataagattttaaatttctaaa 125  Q
    |||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||||||| || | || |  | || |||||||||||||||| ||      
T  45891945 gtagtgttaacttgtgccctaagggcacaagttaagaatctaaaaatagaattaaatcataatttttgtctttgaaaaaataagattttaaatttttagg 45891846  T
Q  126 atattaaatgcacaatttccaataaaatg 154  Q
    | ||| |||||||||| ||||| ||||||    
T  45891845 acattgaatgcacaatctccaacaaaatg 45891817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 67 - 153
Target Start/End: Original strand, 52803243 - 52803329
Alignment:
Q  67 taaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    |||||||| ||||||| |||||||| ||||| || | |||||||||||||||||||||||||| ||| |||| ||||| ||||||||    
T  52803243 taaaaataaaattaaaacataaattttatcttaaaaggataagattttaaatttctaaaatatgaaacgcacgatttctaataaaat 52803329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 4059100 - 4059196
Alignment:
Q  58 ttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    ||||||| || |||||| ||||||| |||||||| | |||  | ||||||| |||||||||||||||||||| |||| ||||||||| |||||||||    
T  4059100 ttaagaaactcaaaataaaattaaaacataaattttgtcttgaaaagataaaattttaaatttctaaaatataaaatacacaatttctaataaaatg 4059196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 14295165 - 14295046
Alignment:
Q  35 aacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaat 134  Q
    |||||||||  ||| ||| | ||||||||| ||||||| | ||||||| |||||||| | ||| || |||||||||||| |||||| |||||||| |||     
T  14295165 aacttgtgcatttaagactcaagttaagaagctaaaaacaaaattaaaacataaattttgtcttaaaaagataagatttgaaatttttaaaatatgaaaa 14295066  T
Q  135 gcacaatttccaataaaatg 154  Q
     |||||||||| ||||||||    
T  14295065 tcacaatttcctataaaatg 14295046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 14311214 - 14311095
Alignment:
Q  35 aacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaat 134  Q
    |||||||||  ||| ||| | ||||||||| ||||||| | ||||||| |||||||| | ||| || |||||||||||| |||||| |||||||| |||     
T  14311214 aacttgtgcatttaagactcaagttaagaagctaaaaacaaaattaaaacataaattttgtcttaaaaagataagatttgaaatttttaaaatatgaaaa 14311115  T
Q  135 gcacaatttccaataaaatg 154  Q
     |||||||||| ||||||||    
T  14311114 tcacaatttcctataaaatg 14311095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 35 - 154
Target Start/End: Complemental strand, 14313415 - 14313296
Alignment:
Q  35 aacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaat 134  Q
    |||||||||  ||| ||| | ||||||||| ||||||| | ||||||| |||||||| | ||| || |||||||||||| |||||| |||||||| |||     
T  14313415 aacttgtgcatttaagactcaagttaagaagctaaaaacaaaattaaaacataaattttgtcttaaaaagataagatttgaaatttttaaaatatgaaaa 14313316  T
Q  135 gcacaatttccaataaaatg 154  Q
     |||||||||| ||||||||    
T  14313315 tcacaatttcctataaaatg 14313296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 18371260 - 18371163
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    |||||||||  ||||||  ||||||||  ||||||| ||||| || || ||||||||||||| |||||||||||  |||||||||||||| |||||||    
T  18371260 agttaagaacgtaaaaaaggaattaaaatataaattttatcttaaaaatataagattttaaagttctaaaatatagaatgcacaatttcctataaaat 18371163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 31040400 - 31040304
Alignment:
Q  58 ttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaa-atgcacaatttccaataaaat 153  Q
    ||||||| ||||||||  |||||||  ||||||| ||| | |  ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  31040400 ttaagaaactaaaaatgaaattaaaatataaattttattttataaagataagattttaaatttctaaaacattaatatgcataatttccaataaaat 31040304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 37861337 - 37861280
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataa 88  Q
    |||||||||||||||||| | ||| ||||||| ||||||||| ||||||||| |||||    
T  37861337 tgttaacttgtgcccttaaggcacaagttaaggatctaaaaaaagaattaaaacataa 37861280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Original strand, 43967986 - 43968055
Alignment:
Q  85 ataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    ||||||||| |||  | |||||||||||| |||||| || ||||||||||||||||||| ||| ||||||    
T  43967986 ataaattatgtcttgaaaagataagatttaaaatttttagaatattaaatgcacaattttcaacaaaatg 43968055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 36622116 - 36622168
Alignment:
Q  102 aagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    ||||||| ||||||||||| ||| ||||| |||||||||||||||| ||||||    
T  36622116 aagataaaattttaaatttttaatatattgaatgcacaatttccaaaaaaatg 36622168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 46963835 - 46963892
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataa 88  Q
    |||||||||||| ||||| | ||| ||||||| ||||||||| ||||||||| |||||    
T  46963835 tgttaacttgtggccttaaggcacaagttaaggatctaaaaaaagaattaaaacataa 46963892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 5050194 - 5050166
Alignment:
Q  218 cccattgtttttccccacccacttcattt 246  Q
    |||||||||||||||||||||||||||||    
T  5050194 cccattgtttttccccacccacttcattt 5050166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 154
Target Start/End: Complemental strand, 13539 - 13412
Alignment:
Q  27 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 126  Q
    |||||| ||||||||||||| | | ||| ||||||||||||||||||  |||||||||||||||||| |||  | |||||||||||||||||||||| ||    
T  13539 gtagtgctaacttgtgccctaagggcacaagttaagaatctaaaaatgcaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaa 13440  T
Q  127 tattaaatgcacaatttccaataaaatg 154  Q
    |||| |||||||||||||||| ||||||    
T  13439 tattgaatgcacaatttccaacaaaatg 13412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 41242138 - 41242265
Alignment:
Q  27 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 126  Q
    |||||||||| ||||||| | | | ||| |||||| ||||||||||||||||||||||||||||||| ||   | |||||||||||| ||||||||||||    
T  41242138 gtagtgttaatttgtgccgtaagggcacaagttaaaaatctaaaaatagaattaaatcataaattatgtcctgaaaagataagatttcaaatttctaaaa 41242237  T
Q  127 tattaaatgcacaatttccaataaaatg 154  Q
    ||||||||||||||||||||| ||||||    
T  41242238 tattaaatgcacaatttccaacaaaatg 41242265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 16053182 - 16053084
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    |||||||||||||||| | ||||||||||||||||||| |||  | |||||||||||||||||||||| |||||| |||||||||||||||| ||||||    
T  16053182 agttaagaatctaaaattggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttccaacaaaatg 16053084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 16037686 - 16037596
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttcca 146  Q
    |||||||||||||||||| ||||||||||| ||||||| |||  | |||||||||||||||||||||| |||||| |||||||||||||||    
T  16037686 agttaagaatctaaaaatggaattaaatcacaaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttcca 16037596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 16041242 - 16041152
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttcca 146  Q
    ||||| |||||||||||| ||||||||||||||||||| |||  | |||||||||||||||||||||| |||||| |||||||||||||||    
T  16041242 agttatgaatctaaaaatggaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatattgaatgcacaatttcca 16041152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 17517840 - 17517965
Alignment:
Q  28 tagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaat 127  Q
    ||||||| | ||||||||| | ||||| |||||||||||||||| |  ||||||||||||||||||||||  | ||||||||| ||||||||| || |||    
T  17517840 tagtgttgatttgtgccctaaggacacaagttaagaatctaaaattgaaattaaatcataaattatatcttgaaaagataagaatttaaatttttagaat 17517939  T
Q  128 attaaatgcacaatttccaataaaat 153  Q
    ||| ||||||||||||| || |||||    
T  17517940 attgaatgcacaatttctaacaaaat 17517965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 147
Target Start/End: Original strand, 11076905 - 11077018
Alignment:
Q  34 taacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaa 133  Q
    ||||||||| | ||| | ||| |||||||||||||||||| |||||||| |||||||| | |||  | || |||||||||||||||||||||||||| |     
T  11076905 taacttgtgtcgttaaggcacaagttaagaatctaaaaatggaattaaaacataaattttgtcttgaaaatataagattttaaatttctaaaatattgat 11077004  T
Q  134 tgcacaatttccaa 147  Q
    ||||||||||||||    
T  11077005 tgcacaatttccaa 11077018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 31229711 - 31229809
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    |||||||||  ||||||||||| |||| ||||||||||||||  | |  |||||||||||||||||||||| ||  |||| ||||||||||||||||||    
T  31229711 agttaagaagttaaaaatagaagtaaaacataaattatatcttgaaatcataagattttaaatttctaaaacatagaatgtacaatttccaataaaatg 31229809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 28389513 - 28389449
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaattt 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||  | ||||||| |||||||||||    
T  28389513 agttaggaatctaaaaatagaattaaatcataaattatatcttgaaaagataatattttaaattt 28389449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 39933469 - 39933360
Alignment:
Q  42 gcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaat 141  Q
    ||||||| | ||| |||||||||||||||||||||||||||||||||||| | | |  | ||||||| | ||||||||| || |||||| ||||||||||    
T  39933469 gcccttacggcacaagttaagaatctaaaaatagaattaaatcataaattgtgttttgaaaagataa-aatttaaatttttagaatattgaatgcacaat 39933371  T
Q  142 ttccaataaaa 152  Q
    || ||| ||||    
T  39933370 tttcaacaaaa 39933360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 37820821 - 37820872
Alignment:
Q  102 aagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    ||||||||||||||||||||||||| ||  |||||| |||||||||||||||    
T  37820821 aagataagattttaaatttctaaaacatggaatgcataatttccaataaaat 37820872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 153
Target Start/End: Original strand, 50744744 - 50744797
Alignment:
Q  100 agaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||  ||||||||    
T  50744744 agaagttaagattttaaatttttaaaatatgaaatgcacaatttttaataaaat 50744797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 4127359 - 4127410
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaa 82  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||  |||||||    
T  4127359 tgttaacttgtacccttatgacacaagttaagaaactaaaaatgtaattaaa 4127410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 50129206 - 50129155
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaa 82  Q
    |||||||||||||||||| | ||| ||||||||| |||||||| ||||||||    
T  50129206 tgttaacttgtgcccttagggcacaagttaagaaactaaaaatggaattaaa 50129155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 51390425 - 51390374
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaa 82  Q
    |||||||||||||||| | ||||| || ||||||||||||||||| ||||||    
T  51390425 tgttaacttgtgccctaaggacacaagataagaatctaaaaatagtattaaa 51390374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 12185666 - 12185792
Alignment:
Q  27 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 126  Q
    |||||||||||||||||  ||| ||||| |||||||||| ||||||| ||||||||||||||||||| |||  | ||||||||||||| |||||||| ||    
T  12185666 gtagtgttaacttgtgcttttaagacacaagttaagaatttaaaaatggaattaaatcataaattatgtcttgaaaagataagattttgaatttctagaa 12185765  T
Q  127 tattaaatgcacaatttccaataaaat 153  Q
    |||| |||||||||||| ||| |||||    
T  12185766 tattgaatgcacaattttcaacaaaat 12185792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 9456168 - 9456294
Alignment:
Q  27 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 126  Q
    |||||||||||||||||||| |   ||| |||||||||| ||||||| ||||||||| ||||||||| |||  | || ||||||||||||||||||| |     
T  9456168 gtagtgttaacttgtgccctaagagcacaagttaagaatataaaaatggaattaaattataaattatgtcttgaaaatataagattttaaatttctagac 9456267  T
Q  127 tattaaatgcacaatttccaataaaat 153  Q
    |||| |||||||||||||||| |||||    
T  9456268 tattgaatgcacaatttccaacaaaat 9456294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 3441206 - 3441304
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    |||||||||  |||||||  ||||||| |||||||| |||||  | || ||||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  3441206 agttaagaaggtaaaaatgaaattaaaacataaattttatcttgaaaatataagattttaaagttctaaaatatgaaatgcacaatttcctataaaatg 3441304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 154
Target Start/End: Original strand, 25070374 - 25070472
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    |||||||||  ||||||||||| |||  |||||||| | |||  | |||||||||||||||||||||||||||| |||| ||||||||  |||||||||    
T  25070374 agttaagaagataaaaatagaaataagacataaattttgtcttcaaaagataagattttaaatttctaaaatatgaaatacacaatttttaataaaatg 25070472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 10068326 - 10068206
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 130  Q
    |||||||||||||||||| ||||| |||||| ||  |||||||  ||||||| |||||||| | |||  | |  |||| ||||||||||||||||| ||     
T  10068326 tgttaacttgtgcccttaggacacaagttaataaggtaaaaatgaaattaaaacataaattttgtcttgacagaataaaattttaaatttctaaaacatg 10068227  T
Q  131 aaatgcacaatttccaataaaat 153  Q
    ||||||||||  |||||||||||    
T  10068226 aaatgcacaa--tccaataaaat 10068206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 10483607 - 10483657
Alignment:
Q  104 gataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    ||||||||||||||||||||||||||  ||| |||||| ||||||||||||    
T  10483607 gataagattttaaatttctaaaatatgtaatacacaatatccaataaaatg 10483657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 35075991 - 35075870
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 130  Q
    ||||||| |||||||||| ||||  |||||||||| |||||||||||||||||||||| || | |||  | |||||||||||||||||||||| ||||||    
T  35075991 tgttaacgtgtgcccttaagacataagttaagaatataaaaatagaattaaatcataatttttgtcttgaaaagataagattttaaatttctagaatatt 35075892  T
Q  131 aaatgcacaatttccaataaaa 152  Q
     |||||||||||| ||| ||||    
T  35075891 gaatgcacaattttcaacaaaa 35075870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 154
Target Start/End: Complemental strand, 39743563 - 39743465
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    |||||||||  | |||||| |||| || |||||||| ||||| || || ||| ||||||||||||||||| ||| |||| |||||||| ||||||||||    
T  39743563 agttaagaagtttaaaataaaatttaaacataaattttatcttaaaaatatatgattttaaatttctaaagtataaaatacacaattttcaataaaatg 39743465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 7802113 - 7802007
Alignment:
Q  45 cttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttc 144  Q
    |||| ||||| |||||||||  ||||||| ||||||||    ||||| | ||| || ||||||| |||||||||||||||||||| ||||| |||||||     
T  7802113 cttaagacacaagttaagaaggtaaaaatggaattaaaatgcaaattttgtcttaa-aagataaaattttaaatttctaaaatatgaaatgaacaatttt 7802015  T
Q  145 caataaaa 152  Q
    ||||||||    
T  7802014 caataaaa 7802007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 5735964 - 5736021
Alignment:
Q  30 gtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcata 87  Q
    ||||||||||||||||| | | ||| ||||||||||||||||| ||||||||| ||||    
T  5735964 gtgttaacttgtgccctaaggccacaagttaagaatctaaaaaaagaattaaaacata 5736021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 154
Target Start/End: Original strand, 31559096 - 31559170
Alignment:
Q  80 aaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    |||| ||||||||| |||  | || |||| |||||||||| |||||||| |||||||||||| ||||| ||||||    
T  31559096 aaataataaattatgtcttgaaaacataaaattttaaattgctaaaatactaaatgcacaatgtccaacaaaatg 31559170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 31558176 - 31558237
Alignment:
Q  27 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataa 88  Q
    ||||||||||||| ||| |||| ||||| |||||||||||| |||||  |||||||| ||||    
T  31558176 gtagtgttaacttatgcacttaggacacaagttaagaatcttaaaatgaaattaaataataa 31558237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 25267019 - 25267116
Alignment:
Q  57 gttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    ||||||||||||||||| ||||||||||||||||||| |||  | | |||||||||||||||||||| |||||  |||||||||||||||| ||||||    
T  25267019 gttaagaatctaaaaatggaattaaatcataaattatgtcttgaaatgataagattttaaatttctataatatcgaatgcacaatttccaacaaaatg 25267116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 40 - 137
Target Start/End: Complemental strand, 39908074 - 39907977
Alignment:
Q  40 gtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgca 137  Q
    ||||||||| ||| | |||||| || ||||||||  ||||||| |||||||| ||| | || ||||||| |||||||||||||||||||| |||||||    
T  39908074 gtgcccttaagactcaagttaaaaagctaaaaatgaaattaaaacataaattttattttaaaaagataacattttaaatttctaaaatatgaaatgca 39907977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Original strand, 2233861 - 2233953
Alignment:
Q  61 agaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    ||||| ||||||||||||||||||||||||| | | |  | ||||||| ||||||||||| || |||||| |||||| ||||||||| |||||    
T  2233861 agaatataaaaatagaattaaatcataaattttgttttgaaaagataaaattttaaatttttagaatattgaatgcataatttccaacaaaat 2233953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 32162880 - 32162808
Alignment:
Q  58 ttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 130  Q
    |||||||||||||||| ||||||||||||||||| ||| |  | || ||||||||||| ||||||||||||||    
T  32162880 ttaagaatctaaaaatggaattaaatcataaattttattttgaaaatataagattttacatttctaaaatatt 32162808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 11190545 - 11190601
Alignment:
Q  34 taacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaat 90  Q
    |||||||||| |||||||||| |||||| || ||||||||||||||||| |||||||    
T  11190545 taacttgtgctcttatgacacgagttaataagctaaaaatagaattaaaacataaat 11190601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 33902215 - 33902300
Alignment:
Q  68 aaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    |||||| ||||||||| ||||||||| |||  | |||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  33902215 aaaaatggaattaaattataaattatgtcttgaaaagataagattttaaatttctaaaatattaaatgcataattttcaataaaat 33902300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 24211286 - 24211411
Alignment:
Q  27 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaa 126  Q
    |||||||||||||||||  | | ||||| |||||||||||||||||||||||||||||||||||||| | |  | ||||| ||||||  |||||||  ||    
T  24211286 gtagtgttaacttgtgcg-taaggacacaagttaagaatctaaaaatagaattaaatcataaattatgttttgaaaagattagatttccaatttcttgaa 24211384  T
Q  127 tattaaatgcacaatttccaataaaat 153  Q
    |||| ||| |||||||||||| |||||    
T  24211385 tattgaatacacaatttccaacaaaat 24211411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 46603800 - 46603750
Alignment:
Q  102 aagataagattttaaatttctaaaatattaaatgcacaatttccaataaaa 152  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  46603800 aagataagattttaaatttctaaaacatgaaatgcacaatttccaataaaa 46603750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 9603578 - 9603492
Alignment:
Q  67 taaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    |||||||||||||||| |||||||  | | |  | ||||||||||||||||||||||||| || ||||||| ||||| |||||||||    
T  9603578 taaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaat 9603492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 153
Target Start/End: Complemental strand, 9831149 - 9831063
Alignment:
Q  67 taaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    |||||||||||||||| |||||||  | | |  | ||||||||||||||||||||||||| || ||||||| ||||| |||||||||    
T  9831149 taaaaatagaattaaaacataaatattgttttgaaaagataagattttaaatttctaaaacatgaaatgcataattttcaataaaat 9831063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 40291261 - 40291213
Alignment:
Q  105 ataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    |||| |||||||| || |||| ||| |||||||||||||||||||||||    
T  40291261 ataatattttaaaattttaaagtatcaaatgcacaatttccaataaaat 40291213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 45996544 - 45996496
Alignment:
Q  105 ataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    |||| ||||||||||| || |||||||||| |||||||| |||||||||    
T  45996544 ataaaattttaaatttttagaatattaaatacacaatttacaataaaat 45996496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 3123 - 2999
Alignment:
Q  28 tagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaat 127  Q
    ||||||||||||||||||| ||| ||| ||||||||||||| |||| |||||||| || |  || | |||  | ||||||||| |||||| |||||||||    
T  3123 tagtgttaacttgtgccctaatgtcacaagttaagaatctataaatggaattaaaacaga--ttttgtcttgaaaagataagactttaaagttctaaaat 3026  T
Q  128 attaaatgcacaatttccaataaaatg 154  Q
    ||| |||||||||||||||| ||||||    
T  3025 attgaatgcacaatttccaacaaaatg 2999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 154
Target Start/End: Complemental strand, 19340060 - 19339936
Alignment:
Q  28 tagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaat 127  Q
    ||||||||||||||||||| ||| ||| ||||||||||||| |||| |||||||| || |  || | |||  | ||||||||| |||||| |||||||||    
T  19340060 tagtgttaacttgtgccctaatgtcacaagttaagaatctataaatggaattaaaacaga--ttttgtcttgaaaagataagactttaaagttctaaaat 19339963  T
Q  128 attaaatgcacaatttccaataaaatg 154  Q
    ||| |||||||||||||||| ||||||    
T  19339962 attgaatgcacaatttccaacaaaatg 19339936  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 154
Target Start/End: Complemental strand, 46298659 - 46298562
Alignment:
Q  57 gttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    |||||||||||||||||||||||||| |||||||  | |||  | |||||||||||||||||||||| |||||| |||  ||||||||||| ||||||    
T  46298659 gttaagaatctaaaaatagaattaaaacataaatgttgtcttgaaaagataagattttaaatttctataatattgaatatacaatttccaacaaaatg 46298562  T

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Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 49423448 - 49423364
Alignment:
Q  69 aaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    |||||||||||||| |||||||  ||||| || ||||||||||||||||||| ||||| || ||||||||||||| |||||||||    
T  49423448 aaaatagaattaaaacataaatattatcttaaaaagataagattttaaatttttaaaacatgaaatgcacaattttcaataaaat 49423364  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 31501006 - 31501133
Alignment:
Q  20 aaaagaagtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatt 119  Q
    |||| ||||||||||||||| |||  | | | ||| | ||||||||||||||||  ||||||||||||| || | | |  | ||||||||||||||||||    
T  31501006 aaaaaaagtagtgttaacttatgctttaagggcacaaattaagaatctaaaaatgaaattaaatcataatttttgttttgaaaagataagattttaaatt 31501105  T
Q  120 tctaaaatattaaatgcacaatttccaa 147  Q
    |||| || ||||||||||||||||||||    
T  31501106 tctagaacattaaatgcacaatttccaa 31501133  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 153
Target Start/End: Original strand, 23392696 - 23392800
Alignment:
Q  50 gacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataaga-ttttaaatttctaaaatattaaatgcacaatttccaat 148  Q
    ||||| |||||| ||||||||||| ||||||||  ||||||| ||||| || || |||||| ||||||| || ||||||||||||||||||||||  |||    
T  23392696 gacacaagttaaaaatctaaaaatggaattaaaaaataaattttatcttaaaaatataagatttttaaaattttaaaatattaaatgcacaattttaaat 23392795  T
Q  149 aaaat 153  Q
    |||||    
T  23392796 aaaat 23392800  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 56 - 153
Target Start/End: Original strand, 25808472 - 25808569
Alignment:
Q  56 agttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    ||||||| |||||||||| ||||||||||||||||  | |||  | ||||||| ||||||||||| ||||||||| ||| ||||||||| || |||||    
T  25808472 agttaaggatctaaaaatggaattaaatcataaatgttgtcttcaaaagataaaattttaaatttttaaaatattgaatacacaatttctaacaaaat 25808569  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 34967793 - 34967742
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaa 82  Q
    |||||||||||||||||  | ||| ||||||||| |||||||||||||||||    
T  34967793 tgttaacttgtgcccttggggcacaagttaagaaactaaaaatagaattaaa 34967742  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 47449300 - 47449243
Alignment:
Q  33 ttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaat 90  Q
    |||||||||||||||| | ||| || ||||||||| ||||||||||||| | ||||||    
T  47449300 ttaacttgtgcccttaggccacaagataagaatcttaaaatagaattaactaataaat 47449243  T

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Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 27 - 153
Target Start/End: Complemental strand, 11152344 - 11152212
Alignment:
Q  27 gtagtgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcata------aattatatctcaagaagataagattttaaattt 120  Q
    ||||||||||||||| || ||| || || |||||||||| |||||||  |||||||| |||      |||||| |||  |||||||||||||||||||||    
T  11152344 gtagtgttaacttgtacctttaggatacaagttaagaatttaaaaatgaaattaaattatagtagtaaattatgtcttgagaagataagattttaaattt 11152245  T
Q  121 ctaaaatattaaatgcacaatttccaataaaat 153  Q
    ||| |||||| |||||||||||||||| |||||    
T  11152244 ctagaatattgaatgcacaatttccaacaaaat 11152212  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 2126179 - 2126269
Alignment:
Q  63 aatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaat 153  Q
    ||||||||||| |||||||||||||||| || |||  | || ||||| |||||||||| ||||||||| |||||||||||||||| |||||    
T  2126179 aatctaaaaatggaattaaatcataaatcatgtcttgaaaatataagtttttaaatttttaaaatattgaatgcacaatttccaacaaaat 2126269  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 147
Target Start/End: Complemental strand, 5578141 - 5578025
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 130  Q
    |||||||||||| | | | | ||| ||||||| ||||||||| ||||||||| |||||||| | | |  | || ||||| ||||||| ||  || |||||    
T  5578141 tgttaacttgtgtcataagggcacaagttaaggatctaaaaagagaattaaaacataaattttgtattgaaaaaataagtttttaaactttcaagatatt 5578042  T
Q  131 aaatgcacaatttccaa 147  Q
    |||||||||||||||||    
T  5578041 aaatgcacaatttccaa 5578025  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 154
Target Start/End: Original strand, 15081331 - 15081379
Alignment:
Q  106 taagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    ||||||||||||||||||||| ||  |||||||||||| ||||||||||    
T  15081331 taagattttaaatttctaaaagatagaatgcacaattttcaataaaatg 15081379  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 4762065 - 4762102
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatcta 68  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  4762065 tgttaacttgtgcccttaagacacaagttaagaatcta 4762102  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 11252696 - 11252647
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaatta 80  Q
    |||||||||||||||||| | ||| || |||| |||||||||||||||||    
T  11252696 tgttaacttgtgcccttagggcacaagataaggatctaaaaatagaatta 11252647  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 2674423 - 2674359
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatat 95  Q
    ||||||||||| |||||||| ||| |  |||||| |||||||||||||||||  |||||| ||||    
T  2674423 tgttaacttgtacccttatggcacgaaataagaacctaaaaatagaattaaaaaataaatgatat 2674359  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 11617277 - 11617373
Alignment:
Q  58 ttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaatttccaataaaatg 154  Q
    |||||||  |||||||  ||||||| |||||||| ||||| |  || |||||||||||||| | ||||| || ||||||||| ||| |||| |||||    
T  11617277 ttaagaaagtaaaaatgaaattaaaacataaattttatcttagaaatataagattttaaatatttaaaacataaaatgcacatttttcaatcaaatg 11617373  T

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Target: scaffold1786 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 491 - 398
Alignment:
Q  50 gacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatattaaatgcacaattt 143  Q
    ||||| |||||| |||||||||||  |||||||  ||||||| ||||| || || ||||||||||||| || ||||||||||||||||||||||    
T  491 gacacaagttaaaaatctaaaaatgaaattaaaaaataaattttatcttaaaaatataagattttaaaattttaaaatattaaatgcacaattt 398  T

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Target: scaffold0007 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 31 - 150
Target Start/End: Original strand, 176183 - 176302
Alignment:
Q  31 tgttaacttgtgcccttatgacactagttaagaatctaaaaatagaattaaatcataaattatatctcaagaagataagattttaaatttctaaaatatt 130  Q
    |||||||||||||||| | ||||| |||||||||  |||||||  |||||||  ||||||  | |||  | || ||| |||||||||||||||||| ||     
T  176183 tgttaacttgtgccctaaagacacaagttaagaagataaaaatgaaattaaaatataaatgttgtcttgaaaatataggattttaaatttctaaaacata 176282  T
Q  131 aaatgcacaatttccaataa 150  Q
    ||||||||||||| ||||||    
T  176283 aaatgcacaattttcaataa 176302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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