View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15948_low_11 (Length: 265)
Name: NF15948_low_11
Description: NF15948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15948_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 247
Target Start/End: Complemental strand, 516011 - 515783
Alignment:
| Q |
19 |
ggaaagtcaccagcttcaaatggaatacctccatttgcagagacaaggatctcatgatgttgaaatcctatgaacaatttccatgctttaagtacatctt |
118 |
Q |
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| T |
516011 |
ggaaagtcaccagcttcaaatggaatacctccatttgcagagacaaggatctcatgatgttgaaatcctatgaacaatttccatgctttaagtacatctt |
515912 |
T |
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| Q |
119 |
ttcctgtgttgagaactgttgcggttgcattaaaggaccaagattgtgccgtgacattcttgacccgaggaaatcccttcctccgatcaagaaaatcata |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
515911 |
ttcctgtgttgagaactgttgcggttgcattaaaggaccaagattgtgccgtgacattcttgacccgaggaaatcccttcctccgatcaagaaaatcata |
515812 |
T |
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| Q |
219 |
cgaaatgaaaactccattacaattttcag |
247 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
515811 |
cgaaatgaaaactccattacaattttcag |
515783 |
T |
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