View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15948_low_12 (Length: 238)
Name: NF15948_low_12
Description: NF15948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15948_low_12 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 6227216 - 6227436
Alignment:
| Q |
18 |
agagcgatgaataagaatgagaatggtataagggtttctaatattggacttttatctatatatattccatctactaataaatcgtagtttgttataaatt |
117 |
Q |
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| T |
6227216 |
agagcgatgaataagaatgagaatggtataagggtttctaatattggacttttatctatatatattccatctacaaataaatcgtagtttgttataaatt |
6227315 |
T |
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| Q |
118 |
attatgaacttatcataattaaaagattgaagttgttcctattttagtggaatactttaagatggaatataactgatttttctttattaaatatttaaat |
217 |
Q |
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| T |
6227316 |
attatgaacttatcataattaaaagattgaagttgttcctattttagtggaatactttaagatggaatataactgatttttctttattaaatatttaaat |
6227415 |
T |
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| Q |
218 |
atgtaatacaaaagatttcct |
238 |
Q |
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| T |
6227416 |
atgtaatacaaaagatttcct |
6227436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 98 - 233
Target Start/End: Original strand, 6234527 - 6234666
Alignment:
| Q |
98 |
atcgtagtttgttataaattattatgaacttatcataattaaaagattgaagttgttcctattttagtggaatact-----ttaagatggaatataactg |
192 |
Q |
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| T |
6234527 |
atcgtagtttgttataaattatttggaacatatcataatt-aaagatttaagttgttcctattttaatggaatacttcctattttgatggaatataaccg |
6234625 |
T |
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| Q |
193 |
atttttctttattaaatatttaaatatgtaatacaaaagat |
233 |
Q |
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| T |
6234626 |
atttttcttgattaaatatttaaatatatagtaccaaagat |
6234666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 98 - 219
Target Start/End: Original strand, 6236543 - 6236668
Alignment:
| Q |
98 |
atcgtagtttgttataaattattatgaacttatcataattaaaagattgaagttgttcctattttagtggaatact-----ttaagatggaatataactg |
192 |
Q |
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| T |
6236543 |
atcgtagtttgctataaattatttggaacatatcataattaaa-gatttaagttgttcctattttaatggaatacttcctattttgatggaatataacgg |
6236641 |
T |
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| Q |
193 |
atttttctttattaaatatttaaatat |
219 |
Q |
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| T |
6236642 |
atttttcttaattaaatatttaaatat |
6236668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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