View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15948_low_13 (Length: 234)
Name: NF15948_low_13
Description: NF15948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15948_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 13079349 - 13079191
Alignment:
| Q |
63 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagattgcaatgaagattaaagatcaacaatgtttgcaagaaaaagaggcaaatgatcatgaaat |
162 |
Q |
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| T |
13079349 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagagtgcaatgaagattaaagatcaacaatgtttgcaagaaaaagaggcaaatgatcatgaaat |
13079250 |
T |
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| Q |
163 |
agagaaagcaaagaaggtgaaaggacaagaggcaaaaagaaagagtgatgaattcattt |
221 |
Q |
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| T |
13079249 |
agagaaagcaaagaaggtgaaaggacaagaggcaaaaagaaagagtgatgaatttattt |
13079191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 63 - 221
Target Start/End: Complemental strand, 13075145 - 13074987
Alignment:
| Q |
63 |
ttgtaccatttgtgaagggagaaagtgaagaacctaagattgcaatgaagattaaagatcaacaatgtttgcaagaaaaagaggcaaatgatcatgaaat |
162 |
Q |
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|||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
13075145 |
ttgtaccatttgtgaagggagaaatttaagaacctaagatttcaatgaagattaaagatcaacaatgtttgcaagaaaatgagtcaaatgatcatgaaat |
13075046 |
T |
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| Q |
163 |
agagaaagcaaagaaggtgaaaggacaagaggcaaaaagaaagagtgatgaattcattt |
221 |
Q |
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| T |
13075045 |
agagtaagcaaataaggtgaaaggataagaggcaaaaagaaattgtgatgaatttattt |
13074987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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