View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15948_low_15 (Length: 203)

Name: NF15948_low_15
Description: NF15948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15948_low_15
NF15948_low_15
[»] chr8 (8 HSPs)
chr8 (32-203)||(6227525-6227696)
chr8 (32-172)||(6235317-6235453)
chr8 (1-34)||(6237672-6237705)
chr8 (98-154)||(3541027-3541083)
chr8 (32-79)||(34142863-34142910)
chr8 (32-81)||(41368710-41368759)
chr8 (32-80)||(11903372-11903420)
chr8 (98-142)||(40722362-40722406)
[»] chr5 (11 HSPs)
chr5 (97-153)||(7123625-7123681)
chr5 (98-153)||(14930546-14930601)
chr5 (33-151)||(17018528-17018646)
chr5 (32-80)||(34303668-34303716)
chr5 (99-151)||(5856249-5856301)
chr5 (32-79)||(32736634-32736681)
chr5 (98-163)||(4460659-4460724)
chr5 (104-181)||(37142897-37142974)
chr5 (98-135)||(41863895-41863932)
chr5 (33-78)||(43398198-43398243)
chr5 (97-157)||(41371117-41371176)
[»] chr7 (8 HSPs)
chr7 (99-157)||(16840681-16840739)
chr7 (32-80)||(39599198-39599246)
chr7 (32-79)||(27425589-27425636)
chr7 (33-67)||(7606335-7606369)
chr7 (98-136)||(37030903-37030941)
chr7 (92-153)||(16169860-16169921)
chr7 (98-150)||(32310925-32310976)
chr7 (32-80)||(39959465-39959513)
[»] chr3 (5 HSPs)
chr3 (98-165)||(47410315-47410382)
chr3 (97-155)||(32797433-32797491)
chr3 (98-157)||(51102991-51103050)
chr3 (105-154)||(54114496-54114545)
chr3 (98-134)||(34876175-34876211)
[»] chr2 (11 HSPs)
chr2 (98-165)||(38502421-38502488)
chr2 (96-154)||(33201409-33201467)
chr2 (98-142)||(2001368-2001412)
chr2 (32-84)||(38502334-38502386)
chr2 (98-151)||(40859969-40860022)
chr2 (42-79)||(44019564-44019601)
chr2 (32-84)||(2189034-2189086)
chr2 (101-153)||(18531244-18531296)
chr2 (32-84)||(26751499-26751551)
chr2 (32-80)||(35314189-35314237)
chr2 (98-166)||(41635841-41635909)
[»] chr1 (6 HSPs)
chr1 (102-159)||(16676768-16676825)
chr1 (47-175)||(43578295-43578427)
chr1 (98-156)||(36564286-36564344)
chr1 (47-79)||(5257182-5257214)
chr1 (32-80)||(35112477-35112525)
chr1 (98-154)||(52871923-52871979)
[»] chr4 (6 HSPs)
chr4 (32-76)||(28476996-28477040)
chr4 (98-151)||(2765886-2765939)
chr4 (32-80)||(4605719-4605767)
chr4 (47-79)||(25359001-25359033)
chr4 (100-144)||(44670518-44670562)
chr4 (100-144)||(44689860-44689904)
[»] chr6 (4 HSPs)
chr6 (33-79)||(33489502-33489548)
chr6 (32-80)||(8872441-8872489)
chr6 (47-79)||(20718192-20718224)
chr6 (32-84)||(32938953-32939005)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 1e-70; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 32 - 203
Target Start/End: Complemental strand, 6227696 - 6227525
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctatatctannnnnnnaatctaaatcaaaattttataaaaattattgttcgtagtt 131  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||| |||||    
T  6227696 aaaaagatagatattgtttgttacaatatgaaagtgcaacatatctatatctatatttttaatctaaatcaaaattttataaaaattattgttcatagtt 6227597  T
Q  132 tatacatattagcgcaataaaaatagtggatagacgaacacggagagcccatatgaatgcttgtgctatata 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  6227596 tatacatattagcgcaataaaaatagtggatagacgaacacggagaacccatatgaatgcttgtactatata 6227525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 32 - 172
Target Start/End: Complemental strand, 6235453 - 6235317
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctatatctannnnnnnaatctaaatcaaaattttataaaaattattgttcgtagtt 131  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||||||       |||| |||||||||||||||||||||||||||||||| ||    
T  6235453 aaaaagataagtattgtttgttacaatatgaaggtgcaacatatctatatctataattttaatcaaaatcaaaattttataaaaattattgttcgtaatt 6235354  T
Q  132 tatacatattagcgcaataaaaatagtggatagacgaacac 172  Q
    |    ||||||| ||||||||||||||||||||||| ||||    
T  6235353 t----atattagtgcaataaaaatagtggatagacggacac 6235317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6237705 - 6237672
Alignment:
Q  1 aagtctcaaggcaatgccgccatatcattccaaa 34  Q
    ||||||||||||||||||||||||||||||||||    
T  6237705 aagtctcaaggcaatgccgccatatcattccaaa 6237672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 3541027 - 3541083
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaa 154  Q
    |||||| |||| |||||| ||| |||||||| |||||||| ||||||||||||||||    
T  3541027 aatcaacatttcataaaagttaatgttcgtaatttatacacattagcgcaataaaaa 3541083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 34142910 - 34142863
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctat 79  Q
    ||||||||| |||| ||||||||||||||||||||| || ||||||||    
T  34142910 aaaaagataagtatagtttgttacaatatgaaagtgtaaaatatctat 34142863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 41368759 - 41368710
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctatat 81  Q
    ||||||||| |||| ||||||||||||||| |||||||| |||| |||||    
T  41368759 aaaaagataagtatagtttgttacaatatgtaagtgcaatatatatatat 41368710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 11903372 - 11903420
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctata 80  Q
    ||||||||| |||| |||||||| ||| ||||||||||| |||||||||    
T  11903372 aaaaagataagtatagtttgttagaatttgaaagtgcaaaatatctata 11903420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 40722362 - 40722406
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatatta 142  Q
    |||||||||||||||||| ||||||||| || |||||||| ||||    
T  40722362 aatcaaaattttataaaagttattgttcataatttatacacatta 40722406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 8e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 7123681 - 7123625
Alignment:
Q  97 aaatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaa 153  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||    
T  7123681 aaatcaaaattttataaaaattattgttcgtaatttatacacattaacgcaataaaa 7123625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 14930546 - 14930601
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaa 153  Q
    |||||||||||||||||| ||||||||| || ||||||||||||| ||||||||||    
T  14930546 aatcaaaattttataaaagttattgttcataatttatacatattaacgcaataaaa 14930601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 17018528 - 17018646
Alignment:
Q  33 aaaagataggtattgtttgttacaatatgaaagtgcaacatatctatatctannnnnnnaatctaaatcaaaattttataaaaattattgttcgtagttt 132  Q
    |||| ||| |||| |||||||||||||||||||| ||| |||| | ||||||       |||| ||| || ||||| ||||||| ||||||| |||||||    
T  17018528 aaaaaataagtatagtttgttacaatatgaaagtacaaaatatatctatctataattttaatcaaaaccagaatttcataaaaactattgtttgtagttt 17018627  T
Q  133 atacatattagcgcaataa 151  Q
    ||||| ||| |||||||||    
T  17018628 atacaaattggcgcaataa 17018646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 34303668 - 34303716
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctata 80  Q
    ||||||||| ||||||||||||||||||||||| ||||| |||||||||    
T  34303668 aaaaagataagtattgtttgttacaatatgaaaatgcaaaatatctata 34303716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 151
Target Start/End: Complemental strand, 5856301 - 5856249
Alignment:
Q  99 atcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataa 151  Q
    |||||||||||||||||| ||||||| ||| |||||||  |||||||||||||    
T  5856301 atcaaaattttataaaaactattgtttgtaatttatactcattagcgcaataa 5856249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 32736634 - 32736681
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctat 79  Q
    ||||||||| |||| ||||||||||||||||||||| || ||||||||    
T  32736634 aaaaagataagtatagtttgttacaatatgaaagtgaaaaatatctat 32736681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 4460659 - 4460724
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaatagtggata 163  Q
    ||||||||||| |||||||  |||||| ||| |||||||  |||||||||||||||| || |||||    
T  4460659 aatcaaaatttcataaaaacaattgtttgtaatttatacgaattagcgcaataaaaagagcggata 4460724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 104 - 181
Target Start/End: Original strand, 37142897 - 37142974
Alignment:
Q  104 aattttataaaaattattgttcgtagtttatacatattagcgcaataaaaatagtggatagacgaacacggagagccc 181  Q
    ||||||||||||| |||  |||||| ||||||   |||| |||||||| ||||||||||||| | |||||||| ||||    
T  37142897 aattttataaaaactatctttcgtaatttatatgcattaacgcaataagaatagtggatagaaggacacggagtgccc 37142974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 41863932 - 41863895
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttata 135  Q
    ||||||||||| ||||||||||||||||||| ||||||    
T  41863932 aatcaaaatttcataaaaattattgttcgtaatttata 41863895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 78
Target Start/End: Complemental strand, 43398243 - 43398198
Alignment:
Q  33 aaaagataggtattgtttgttacaatatgaaagtgcaacatatcta 78  Q
    |||| ||| |||| |||||||||||||||||||||||| |||||||    
T  43398243 aaaaaataagtatagtttgttacaatatgaaagtgcaaaatatcta 43398198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 41371117 - 41371176
Alignment:
Q  97 aaatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaatag 157  Q
    |||||||||||  |||||||| |||||| ||| |||||||| ||||||||||| |||||||    
T  41371117 aaatcaaaattgcataaaaat-attgtttgtaatttatacacattagcgcaatcaaaatag 41371176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 16840681 - 16840739
Alignment:
Q  99 atcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaatag 157  Q
    |||||||||| ||||||| ||||||||||| |||||||||||||||||||||| |||||    
T  16840681 atcaaaatttcataaaaactattgttcgtaatttatacatattagcgcaataagaatag 16840739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 39599198 - 39599246
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctata 80  Q
    ||||||||| |||| |||||||||||||||||| ||||| |||||||||    
T  39599198 aaaaagataagtatagtttgttacaatatgaaattgcaaaatatctata 39599246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 79
Target Start/End: Complemental strand, 27425636 - 27425589
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctat 79  Q
    ||||||||| |||| |||||||| ||||||||||||||| ||||||||    
T  27425636 aaaaagataagtatagtttgttataatatgaaagtgcaaaatatctat 27425589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 7606335 - 7606369
Alignment:
Q  33 aaaagataggtattgtttgttacaatatgaaagtg 67  Q
    |||||||| ||||||||||||||||||||||||||    
T  7606335 aaaagataagtattgtttgttacaatatgaaagtg 7606369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 136
Target Start/End: Complemental strand, 37030941 - 37030903
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatac 136  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  37030941 aatcaaaattttataaaaattatggttcgtaatttatac 37030903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 16169860 - 16169921
Alignment:
Q  92 aatctaaatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaa 153  Q
    |||| |||||||||||||||||||| ||| |||| || ||| || ||||||||||| |||||    
T  16169860 aatcaaaatcaaaattttataaaaaatatcgttcataatttttaaatattagcgcagtaaaa 16169921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 32310925 - 32310976
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaata 150  Q
    ||||||||||| |||||||| |||||| |||||||||||| | ||||||||||    
T  32310925 aatcaaaatttcataaaaat-attgttagtagtttatacacactagcgcaata 32310976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 39959465 - 39959513
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctata 80  Q
    ||||||||| ||||| ||||||||||||| |||||| || |||||||||    
T  39959465 aaaaagataagtattttttgttacaatataaaagtgtaaaatatctata 39959513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 47410382 - 47410315
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaatagtggataga 165  Q
    ||||||||||| ||||||||||||||||||| |||||||| |||| ||||||| ||| || |||||||    
T  47410382 aatcaaaatttcataaaaattattgttcgtaatttatacacattaacgcaatataaagagcggataga 47410315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 155
Target Start/End: Original strand, 32797433 - 32797491
Alignment:
Q  97 aaatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaat 155  Q
    |||| ||||||| ||||||||||||||||||| |||||||| |||||| ||||||||||    
T  32797433 aaattaaaatttcataaaaattattgttcgtaatttatacacattagcacaataaaaat 32797491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 51103050 - 51102991
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaatag 157  Q
    |||||||||||||||||||||||||||| || |||||||| ||||||   ||||||||||    
T  51103050 aatcaaaattttataaaaattattgttcataatttatacacattagcatcataaaaatag 51102991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 54114496 - 54114545
Alignment:
Q  105 attttataaaaattattgttcgtagtttatacatattagcgcaataaaaa 154  Q
    |||||||||||||||||||||||| ||||||   ||||||||||||||||    
T  54114496 attttataaaaattattgttcgtaatttatatgcattagcgcaataaaaa 54114545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 34876175 - 34876211
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttat 134  Q
    ||||||||||||||||||||||||||||||| |||||    
T  34876175 aatcaaaattttataaaaattattgttcgtaatttat 34876211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 38502421 - 38502488
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaatagtggataga 165  Q
    ||||| |||||||||||||  |||||||||| ||||||   ||||||| |||||||||||||||||||    
T  38502421 aatcagaattttataaaaacaattgttcgtaatttatatgcattagcgtaataaaaatagtggataga 38502488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 96 - 154
Target Start/End: Original strand, 33201409 - 33201467
Alignment:
Q  96 taaatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaa 154  Q
    ||||||||||||| || |||| ||||||||||| ||||||  |||||||||||||||||    
T  33201409 taaatcaaaatttcattaaaactattgttcgtaatttatatgtattagcgcaataaaaa 33201467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 2001368 - 2001412
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatatta 142  Q
    ||||||||||||||||||| ||||||||||| ||||||| |||||    
T  2001368 aatcaaaattttataaaaaatattgttcgtaatttatacgtatta 2001412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 38502334 - 38502386
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctatatcta 84  Q
    ||||||||| |||| ||||||||||||||||| |||||| |||| ||||||||    
T  38502334 aaaaagataagtatagtttgttacaatatgaaggtgcaaaatatatatatcta 38502386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 40859969 - 40860022
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataa 151  Q
    ||||||||||| || |||| ||||||||||| |||||||  |||||||||||||    
T  40859969 aatcaaaatttcattaaaactattgttcgtaatttatacgcattagcgcaataa 40860022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 44019564 - 44019601
Alignment:
Q  42 gtattgtttgttacaatatgaaagtgcaacatatctat 79  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  44019564 gtatagtttgttacaatatgaaagtgcaaaatatctat 44019601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 2189086 - 2189034
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctatatcta 84  Q
    ||||| ||| |||| ||||||||| |||||||| ||||| |||||||||||||    
T  2189086 aaaaatataagtatagtttgttacgatatgaaaatgcaaaatatctatatcta 2189034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 18531296 - 18531244
Alignment:
Q  101 caaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaa 153  Q
    ||||||||||||||||||| ||||| || ||||||| || |||| ||||||||    
T  18531296 caaaattttataaaaattaatgttcataatttatacgtaatagcacaataaaa 18531244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 26751551 - 26751499
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctatatcta 84  Q
    ||||||||| ||||  ||||||||||||||||||| ||| |||||||| ||||    
T  26751551 aaaaagataagtataatttgttacaatatgaaagttcaaaatatctatgtcta 26751499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 35314189 - 35314237
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctata 80  Q
    ||||| ||| |||| |||||||||||||||||||||||| |||| ||||    
T  35314189 aaaaaaataagtatagtttgttacaatatgaaagtgcaaaatatatata 35314237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 41635909 - 41635841
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaatagtggatagac 166  Q
    ||||||||||||| ||||| |||  || ||| |||||||| | |||||||||||||| || ||||||||    
T  41635909 aatcaaaattttacaaaaactatcatttgtaatttatacacactagcgcaataaaaaaagcggatagac 41635841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 159
Target Start/End: Original strand, 16676768 - 16676825
Alignment:
Q  102 aaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaatagtg 159  Q
    ||||||| ||||||| ||||| |||| ||||||||||||||| |||||||||| ||||    
T  16676768 aaaatttcataaaaaatattggtcgtggtttatacatattagagcaataaaaaaagtg 16676825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 43578427 - 43578295
Alignment:
Q  47 gtttgttacaatatg--aaagtgcaacatatctat--atctannnnnnnaatctaaatcaaaattttataaaaattattgttcgtagtttatacatatta 142  Q
    |||||||||||||||  ||||||||||||||||||  |||||       ||| | ||||||||||| |||||||||||||| | || |||||||   |||    
T  43578427 gtttgttacaatatgtgaaagtgcaacatatctatttatctatacttataattttaatcaaaatttcataaaaattattgtgcataatttatactcgtta 43578328  T
Q  143 gcgcaataaaaatagtggatagacgaacacgga 175  Q
      ||||||| || |||||||||||| |||||||    
T  43578327 atgcaataagaagagtggatagacggacacgga 43578295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 156
Target Start/End: Original strand, 36564286 - 36564344
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaata 156  Q
    |||||||||||||| ||||| ||||||| || ||||||| ||||||| |||||| ||||    
T  36564286 aatcaaaattttatgaaaataattgttcataatttatacgtattagcccaataagaata 36564344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Original strand, 5257182 - 5257214
Alignment:
Q  47 gtttgttacaatatgaaagtgcaacatatctat 79  Q
    |||||||||||||||||||||||| ||||||||    
T  5257182 gtttgttacaatatgaaagtgcaaaatatctat 5257214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 35112477 - 35112525
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctata 80  Q
    ||||||||| |||| ||||||||||| |||||| ||||| |||||||||    
T  35112477 aaaaagataagtatagtttgttacaacatgaaaatgcaaaatatctata 35112525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 154
Target Start/End: Complemental strand, 52871979 - 52871923
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataaaaa 154  Q
    |||||||| |||||||||||||||||| ||| |||||||  |||| | |||||||||    
T  52871979 aatcaaaactttataaaaattattgtttgtaatttatacgcattaacacaataaaaa 52871923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 28477040 - 28476996
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatc 76  Q
    ||||||||| |||| |||||||||||||||||||||||| |||||    
T  28477040 aaaaagataagtatagtttgttacaatatgaaagtgcaaaatatc 28476996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 2765939 - 2765886
Alignment:
Q  98 aatcaaaattttataaaaattattgttcgtagtttatacatattagcgcaataa 151  Q
    |||||||| || ||||||||||||||||||| ||||||| |||||  |||||||    
T  2765939 aatcaaaacttcataaaaattattgttcgtaatttatacgtattaatgcaataa 2765886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 4605767 - 4605719
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctata 80  Q
    ||||||||| ||||||||| ||||||||||||| || || |||||||||    
T  4605767 aaaaagataagtattgtttcttacaatatgaaaatgaaaaatatctata 4605719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 25359033 - 25359001
Alignment:
Q  47 gtttgttacaatatgaaagtgcaacatatctat 79  Q
    |||||||||||||||||||||||| ||||||||    
T  25359033 gtttgttacaatatgaaagtgcaaaatatctat 25359001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 44670518 - 44670562
Alignment:
Q  100 tcaaaattttataaaaattattgttcgtagtttatacatattagc 144  Q
    ||||||||| |||||| |||||||||||| ||||||| |||||||    
T  44670518 tcaaaatttgataaaatttattgttcgtaatttatacgtattagc 44670562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 44689860 - 44689904
Alignment:
Q  100 tcaaaattttataaaaattattgttcgtagtttatacatattagc 144  Q
    ||||||||| |||||| |||||||||||| ||||||| |||||||    
T  44689860 tcaaaatttgataaaatttattgttcgtaatttatacgtattagc 44689904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 79
Target Start/End: Original strand, 33489502 - 33489548
Alignment:
Q  33 aaaagataggtattgtttgttacaatatgaaagtgcaacatatctat 79  Q
    |||| ||| |||| |||||||||||||||||||||||| ||||||||    
T  33489502 aaaatataagtatagtttgttacaatatgaaagtgcaaaatatctat 33489548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 8872489 - 8872441
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctata 80  Q
    ||||||||| |||| ||||||||||||||||||||| || |||| ||||    
T  8872489 aaaaagatatgtatagtttgttacaatatgaaagtgaaaaatatatata 8872441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 20718224 - 20718192
Alignment:
Q  47 gtttgttacaatatgaaagtgcaacatatctat 79  Q
    |||||||||||||||||||||||| ||||||||    
T  20718224 gtttgttacaatatgaaagtgcaaaatatctat 20718192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 84
Target Start/End: Original strand, 32938953 - 32939005
Alignment:
Q  32 aaaaagataggtattgtttgttacaatatgaaagtgcaacatatctatatcta 84  Q
    ||||| ||| |||| |||||||||||||| ||| ||||| |||||||||||||    
T  32938953 aaaaatataagtatagtttgttacaatataaaattgcaaaatatctatatcta 32939005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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