View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15948_low_5 (Length: 437)
Name: NF15948_low_5
Description: NF15948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15948_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 20 - 428
Target Start/End: Complemental strand, 38249899 - 38249491
Alignment:
| Q |
20 |
atataatatcaacaattgaatttatttatgaaacattgacatagactttcccattactttgagcggtacaagtatagacctatattaaaatgaaagaatg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38249899 |
atataatatcaacaattgaatttatttatgaaacattgacatagactttcccattactttgagcggtacaagtatagacctatattaaaatgaaagaatg |
38249800 |
T |
|
| Q |
120 |
aagaagtcatgctaataataaattctgatattgctttcccgagtgtgaaatgaaagattgtgaagaacattatcatgtgatgatgatgaggtgggtctca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38249799 |
aagaagtcatgctaataataaattctgatattgctttcccgagtgtgaaatgaaagattgtgaagaacattatcatgtgatgatgatgaggtgggtctca |
38249700 |
T |
|
| Q |
220 |
ggtacattttctatataaaaatacttcgaatagtagctagttttctcgtcaaacaaagctcaactctgccatttccaaactatctttctgaggaacgcaa |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38249699 |
ggtacattttctatataaaaatacttcgaatagtagctagttttctcgtcaaacaaagctcaactctgccatttccaaactatctttctgaggaacgcaa |
38249600 |
T |
|
| Q |
320 |
ctcaagccattccatcttctcttctgcatgcttttgctccgtattgattgtgttcaaactatgttttttcatgcatatttgtgtagtttatcttgccctt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38249599 |
ctcaagccattccatcttctcttctgcatgcttttgctccgtattgattgtgttcaaactatgttttttcatgcatatttgtgtagtttatcttgccttt |
38249500 |
T |
|
| Q |
420 |
tttaatatt |
428 |
Q |
| |
|
||||||||| |
|
|
| T |
38249499 |
tttaatatt |
38249491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 18559900 - 18559846
Alignment:
| Q |
291 |
tttccaaactatctttct---gaggaacgcaactcaagccattccatcttctctt |
342 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
18559900 |
tttccaaactatctttcttctgaggtacgcaactcaagccatttcatcttctctt |
18559846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University