View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15948_low_6 (Length: 429)
Name: NF15948_low_6
Description: NF15948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15948_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 3 - 414
Target Start/End: Original strand, 29474026 - 29474437
Alignment:
| Q |
3 |
ttttttgcagggatggcttcttttctcaaggatttaaattgaaattataagtaagtgagggaagaacctttgtgttacagctgaagcaggttgtttctag |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29474026 |
ttttttgcagggatggcttcttttctcaaggatttaaattgaaattataagtaagtgaaggaagaacctttgtgttacagctgaagcaggttgtttctag |
29474125 |
T |
|
| Q |
103 |
tggtggaatcagtcattttggtttgcgagaaacgttaaatatatcacagttggagcatcatctagttttatgtctctttttgaatggtgcgagatcttac |
202 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29474126 |
tggtggaatcagtcattttggtttgcgggaaacgttaaatatatcacagttggagcatcatctagttttatgtctctttttgaatggtgcgagatcttac |
29474225 |
T |
|
| Q |
203 |
ttctccctctcgtgtaaaatctcacttgaggggatttattctcagtagaaccatgaaaggatagcctacggcgaaagaaaggcacacgaaagtgaaacaa |
302 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29474226 |
ttctccctctcgtataaaatctcacttgaggggatttattctcagtagaaccatgaaaagatagcctacggcgaaagaaaggcacacgaaagtgaaacaa |
29474325 |
T |
|
| Q |
303 |
agatctccaagccaaaatataatattgaagatcagatacataatgtacaaaacttctttcttttccttttactttggtgtatatcttggtttgtaattgc |
402 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29474326 |
agatctccaagccaaaatataatattgaagatcagatacataatgtacaaaacttctttcttttccttttactttggtgtatgtcttggtttgtaattgc |
29474425 |
T |
|
| Q |
403 |
taggatcttgct |
414 |
Q |
| |
|
||| |||||||| |
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|
| T |
29474426 |
tagtatcttgct |
29474437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 29468910 - 29469194
Alignment:
| Q |
1 |
tcttttttgcagggatggcttcttttctcaaggatttaaattgaaattataagtaagtgagggaagaacctttgtgttacagctgaagcaggttgtttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29468910 |
tcttttttgcagggatggcttcttttctcaaggatttaaattgaaattataagtaagtgaaggaagaacctttgtgttacagctgaagcaggttgtttct |
29469009 |
T |
|
| Q |
101 |
agtggtggaatcagtcattttggtttgcgagaaacgttaaatatatcacagttggagcatcatctagttttatgtctctttttgaatggtgcgagatctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29469010 |
agtggtggaatcagtcattttggtttgcgggaaaccttaaatatatcacagttggagcatcatctagttttatgtctctttttgaatggtgcgagatctt |
29469109 |
T |
|
| Q |
201 |
acttctccctctcgtgtaaaatctcacttgaggggatttattctcagtagaaccatgaaaggatagcctacggcgaaagaaaggc |
285 |
Q |
| |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29469110 |
acttctccctctcgtataaaatctcacttgaggggatttattctcagtagaaccatgaaaggatagcctacggcgaaagaaaggc |
29469194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 280 - 414
Target Start/End: Original strand, 29473514 - 29473648
Alignment:
| Q |
280 |
aaaggcacacgaaagtgaaacaaagatctccaagccaaaatataatattgaagatcagatacataatgtacaaaacttctttcttttccttttactttgg |
379 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29473514 |
aaaggcacaccaaagtgaaacaaagatctccaagccaaaatataatattgaagatcagatacataatgtacaaaacttctttcttttccttttactttgg |
29473613 |
T |
|
| Q |
380 |
tgtatatcttggtttgtaattgctaggatcttgct |
414 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |
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|
| T |
29473614 |
tgtatgtcttggtttgtaattgctagtatcttgct |
29473648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 92 - 366
Target Start/End: Complemental strand, 29422407 - 29422143
Alignment:
| Q |
92 |
gttgtttctagtggtggaatcagtcattttggtttgcgagaaacgttaaatatatcacagttggagcatcatctagtttt-atgtctctttttgaatggt |
190 |
Q |
| |
|
||||||| ||||| |||| | |||||| ||| |||||| ||| |||||||| ||| | ||||||||| |||||||| | |||||| || | |||| |
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|
| T |
29422407 |
gttgtttgtagtgatggatttagtcatgttgatttgcgggaagcgttaaattgatccgaaatggagcatcgcctagtttttaactctcttcttcattggt |
29422308 |
T |
|
| Q |
191 |
gcgagatcttacttctccctctcgtgtaaaatctcacttgaggggatttattctcagtagaaccatgaaaggatagcctacggcgaaagaaaggcacacg |
290 |
Q |
| |
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| ||||| |||| |||||||| ||||||||||||| ||||||||| ||||||||||||||| | | |||||| | ||||||||||| | |
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| T |
29422307 |
gtaagatcacacttttccctctcatgtaaaatctcac--gaggggattcattctcagtagaaccgt-------ttgcctacagtgaaagaaaggcctgca |
29422217 |
T |
|
| Q |
291 |
aaagtgaaacaaagatctccaagccaaaatataatattgaagatcagatacataatgtacaaaacttctttctttt |
366 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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|
| T |
29422216 |
gaagtgaaacaaagatctc--agccaaaatataatattgaagattagatacataatgtacataacttctttctttt |
29422143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 29454251 - 29454365
Alignment:
| Q |
10 |
cagggatggcttcttttctcaaggatttaaattgaaattataagtaagtgagggaagaacctttgtgttacagctgaagcaggttgtttctagtggtgga |
109 |
Q |
| |
|
|||||||| |||||| || | |||||||||||||||||| ||| ||||| ||||||| ||||| | |||||||||| ||||||||||||| |||| |
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| T |
29454251 |
cagggatgacttcttgtcccgaggatttaaattgaaattgtaatggagtgaaggaagaatctttgatgtgtagctgaagcaagttgtttctagtgatgga |
29454350 |
T |
|
| Q |
110 |
atcagtcattttggt |
124 |
Q |
| |
|
| |||||| ||||| |
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|
| T |
29454351 |
tttagtcatgttggt |
29454365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 409
Target Start/End: Original strand, 29454443 - 29454523
Alignment:
| Q |
334 |
tcagatacataatgtacaaaacttctttcttttcctttta-----ctttggtgtatatcttggtttgtaattgctaggatc |
409 |
Q |
| |
|
|||||||| |||| |||| |||||||||||||||||||| |||||||||| |||||| |||||||||||||||| |
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|
| T |
29454443 |
tcagatacctaatctacatgacttctttcttttccttttattttcatttggtgtatcacttggtctgtaattgctaggatc |
29454523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 153 - 401
Target Start/End: Original strand, 12007285 - 12007531
Alignment:
| Q |
153 |
tggagcatcatctagttttatgtctctttttgaatggtgcgagatcttacttctccctctcgtgtaaaatctcacttgaggggatttattctcagtagaa |
252 |
Q |
| |
|
|||||||| | ||||||||| | |||| || ||||||| |||||| ||||| |||| ||||||||||||| ||||| |||| |||||| | |||| |
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|
| T |
12007285 |
tggagcattaactagttttaactttcttctttaatggtgtgagatcactcttctatatctcatgtaaaatctcacatgaggagattcattctcggcagaa |
12007384 |
T |
|
| Q |
253 |
ccatgaaaggatagcctacggcgaaagaaaggcacacgaaagtgaaacaaagatctccaagccaaaatataatattgaagatcagatacataatgtacaa |
352 |
Q |
| |
|
|| ||||||||| |||||| | ||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||| | |||||| ||||||| |
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|
| T |
12007385 |
ccgtgaaaggattgcctacagtgaaagaaaggcccatggaagtgaaacaaagatct-caagccaaaatataatattgaagtttagataccatatgtacat |
12007483 |
T |
|
| Q |
353 |
aacttctttcttttccttttactttggtgtatatcttggtttgtaattg |
401 |
Q |
| |
|
|||||| |||||||||||| ||||||| ||| |||||| |||||||| |
|
|
| T |
12007484 |
gacttctatcttttcctttt-ctttggtttatcacttggtctgtaattg |
12007531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 129
Target Start/End: Original strand, 12019783 - 12019909
Alignment:
| Q |
3 |
ttttttgcagggatggcttcttttctcaaggatttaaattgaaattataagtaagtgagggaagaacctttgtgttacagctgaagcaggttgtttctag |
102 |
Q |
| |
|
|||||| |||||||| |||||| || ||||||||||||||| ||| |||| ||||| ||||||| | ||| | |||||||||| ||||||||||| |
|
|
| T |
12019783 |
ttttttacagggatgacttcttgtccaaaggatttaaattgacattgtaagggagtgaaggaagaatcgttgatgtgtagctgaagcaagttgtttctag |
12019882 |
T |
|
| Q |
103 |
tggtggaatcagtcattttggtttgcg |
129 |
Q |
| |
|
|| |||||| |||||| |||||||||| |
|
|
| T |
12019883 |
tgatggaattagtcatgttggtttgcg |
12019909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 292 - 372
Target Start/End: Original strand, 11988582 - 11988661
Alignment:
| Q |
292 |
aagtgaaacaaagatctccaagccaaaatataatattgaagatcagatacataatgtacaaaacttctttcttttcctttt |
372 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| | |||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
11988582 |
aagtgaaacaaagatctcta-gccaaaatataagactgaagatcagataccatatgtacatgacttctttcttttcctttt |
11988661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 3 - 264
Target Start/End: Original strand, 11988316 - 11988579
Alignment:
| Q |
3 |
ttttttgcagggatggcttcttttctcaaggatttaaattgaaattataagtaagtgagggaagaacctttgtgttacagctgaagcaggttgtttctag |
102 |
Q |
| |
|
|||||| |||||||| |||||| || ||||||||||||||| ||| |||| ||||| |||||||||||||| | |||||||||| ||| ||| ||| |
|
|
| T |
11988316 |
ttttttacagggatgacttcttgtcaaaaggatttaaattgacattgtaagggagtgaaggaagaacctttgttgtgtagctgaagcaagttctttatag |
11988415 |
T |
|
| Q |
103 |
---tggtggaatcagtcattttggtttgcgagaaacgttaaatatatcacagttggagcatcatctagttttatgtctctttttgaatggtgcgagatct |
199 |
Q |
| |
|
|| |||||| ||||| ||||||||| ||| | |||||| || | ||| |||||| ||||||||| |||||| || |||| || |||||| |
|
|
| T |
11988416 |
tgatgatggaatttgtcatgttggtttgcaggaagcattaaattgattaggaatggtgcatcacctagttttaactctcttctttaatgttgtgagatca |
11988515 |
T |
|
| Q |
200 |
tacttctccctctcgtgtaaaatctcacttgaggggatttattctcagtagaaccatgaaaggat |
264 |
Q |
| |
|
||||||| || || | || |||||||| |||||||||| | |||| |||||||| ||||||||| |
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|
| T |
11988516 |
cacttctctctgtcatttagaatctcacatgaggggattca-tctcggtagaaccgtgaaaggat |
11988579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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