View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15948_low_7 (Length: 423)
Name: NF15948_low_7
Description: NF15948
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15948_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 43462870 - 43462461
Alignment:
| Q |
1 |
aactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaagtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462870 |
aactccacgtgagtgacaagtctcaacaacactaacgatagttcttgcaagtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatca |
43462771 |
T |
|
| Q |
101 |
aacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatttggactcccaaccaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43462770 |
aacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatttagactcccaaccaagt |
43462671 |
T |
|
| Q |
201 |
gatgcattatcttaatctccatcctcacatcctctacatcatcatcttctaacaatttcacctttgggattaccttgcatgcataccttttcccggttga |
300 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43462670 |
gatgcattatcttaatttccctcctcacatcctctacatcatcatcttctaacaatttcacctttgggattaccttgcatgcatacgttttcccggttga |
43462571 |
T |
|
| Q |
301 |
tttctccaaacaaagtgaagtagttccgaattccccttctccaagttcatctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaatt |
400 |
Q |
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|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43462570 |
tttctccaaacaaagtgaagtagttccaaattccccttctccaagttcatctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaatt |
43462471 |
T |
|
| Q |
401 |
gattcttctc |
410 |
Q |
| |
|
|||||||||| |
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|
| T |
43462470 |
gattcttctc |
43462461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 43453431 - 43453034
Alignment:
| Q |
1 |
aactccacgtgagtgacaagtctcaacaacactaacaatagttcttgcaagtttagcggccttttgttcggcgtagtaacctcttttcacaatcctatca |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| |||||||| |||||||| |||||| |||| ||| | | |||| ||||||||| ||| |
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| T |
43453431 |
aactccacgtgagtgacaagcctcaacaacattaacaatcgttcttgcgagtttagcagcctttctctcggtgtaatgtctcctttccacaatcctgtca |
43453332 |
T |
|
| Q |
101 |
aacaactcacctcctttacataattccatgacaatataaacaacatcagaatcttcataaactccttttatacatatcacatttggactcccaaccaagt |
200 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||||||| | | |||||||||| |||||||||| |||||||||||||| ||||||| |||| |
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| T |
43453331 |
aacaactcacctccttcacataattccattacaatataaacaacgaccggatcttcataagctccttttattgatatcacatttggaatcccaactaagt |
43453232 |
T |
|
| Q |
201 |
gatgcattatcttaatctccatcctcacatcctctacatcatcatcttctaacaatttcacctttgggattaccttgcatgcataccttttcccggttga |
300 |
Q |
| |
|
|||||||||| | ||||||| ||||||||||||||| ||||| ||| |||||||| |||||||| ||| | |||||||| || | |||| |||||| |
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| T |
43453231 |
gatgcattatttcaatctccctcctcacatcctctatatcattctctctaaacaattttacctttggtattgctttgcatgcgtatgtcttcctggttga |
43453132 |
T |
|
| Q |
301 |
tttctccaaacaaagtgaagtagttccgaattccccttctccaagttcatctcctaactcatagtattccttaaaagaaccattgtttgacaacaaaa |
398 |
Q |
| |
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||||||||||||||||||||||||||| || | |||| ||||||||||||||||||| ||| ||||| |||||| ||||||||||| |||||||| |
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|
| T |
43453131 |
tttctccaaacaaagtgaagtagttccaaactttcctttcccaagttcatctcctaacttataaaattccctaaaaggaccattgtttgtcaacaaaa |
43453034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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