View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594R-Insertion-2 (Length: 712)
Name: NF1594R-Insertion-2
Description: NF1594R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594R-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 102 - 526
Target Start/End: Original strand, 47509406 - 47509828
Alignment:
| Q |
102 |
gcaaagtcgtaaccgtaaaccaaaatgtcagacggaggagcttttcaattgcagatacttgacggaactaacctcagagacctcgatctatcttccaccg |
201 |
Q |
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| T |
47509406 |
gcaaagtcgtaaccgtaaaccaaaatgtcagacggaggagcgtttcaattgcagatacttgacggaactaacctcagagacctcgatctatcttccaccg |
47509505 |
T |
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| Q |
202 |
tctttgatcgtgcgttcaccggagctcaattactcgacattgctcattcacgtgcttctctttctctcttcgatcttcctttacctgatcctctcaaaac |
301 |
Q |
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| T |
47509506 |
tctttgatcgtgcgttcaccggagctcaattactcgacattgctcattcacgtgcttctctttctctcttcgatcttcctttacctgatcctctcaaaac |
47509605 |
T |
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| Q |
302 |
ctctgctctcaaccgcctccgtagcagtaactccgatgcctatgttttcttatcccttgagaccgagtaccaacctgctaaagcctctgaaatccttaaa |
401 |
Q |
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| T |
47509606 |
ctctgctctcaaccgcctccgtagcagtaactccgatgccgatgttgtcttttcccttgagaccgagtaccaacctgctaaagcctctgaaatccttaaa |
47509705 |
T |
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| Q |
402 |
ctctacatcgccgccatcgccgatgaactcaaaggtttcttatctatattatcttcttctcctcatcatacattattatatttatacaaaatttcttcta |
501 |
Q |
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| T |
47509706 |
ctctacatcgccgccatcgccgatgaactcaaaggtttcttatc--tattatcttcttctcctcatcatacattattatatttatacaaaatttcttcta |
47509803 |
T |
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| Q |
502 |
tgtaaatatctaatatcgatccgtg |
526 |
Q |
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| T |
47509804 |
tgtaaatatctaatatcgatccgtg |
47509828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 579 - 709
Target Start/End: Original strand, 47509882 - 47510012
Alignment:
| Q |
579 |
cttcgctaattggctaataatcatcccagaacgtgttgatcaaatttggactcaaacattgtgtagataatttgaattggtggacttggatttgactttc |
678 |
Q |
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| T |
47509882 |
cttcgctaattggctaataatcatcctagaacgtgttgatcaaatttggactcaaacattgtgtagataatttgaattggtggacttggatttgactttc |
47509981 |
T |
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| Q |
679 |
gtacgaataaatattactgcacttgttaatt |
709 |
Q |
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| T |
47509982 |
gtacgaataaatattactccacttgttaatt |
47510012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 8 - 57
Target Start/End: Original strand, 47509319 - 47509368
Alignment:
| Q |
8 |
attgaattgaattgattaatactattcctaactttcaagtctttgttcct |
57 |
Q |
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| T |
47509319 |
attgaattgaattgattaatactactcctaactttcaagtctttgttcct |
47509368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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