View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1594R-Insertion-4 (Length: 601)
Name: NF1594R-Insertion-4
Description: NF1594R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594R-Insertion-4 |
 | |
|
| [»] chr2 (32 HSPs) |
| |
|
| [»] scaffold0283 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 570; Significance: 0; HSPs: 32)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 8 - 601
Target Start/End: Original strand, 39216354 - 39216947
Alignment:
| Q |
8 |
attgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagt |
107 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39216354 |
attgtcattatcatttaccgacgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagt |
39216453 |
T |
|
| Q |
108 |
cacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagctaatttgctagactcat |
207 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39216454 |
cacaccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagctaatttgctagactcat |
39216553 |
T |
|
| Q |
208 |
cagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatattta |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39216554 |
cagatccatcaagacttgttttggatatgatacagaaccctactattcaattgtgtaagaagggagacaatgctgtgattattgctgattaccatattta |
39216653 |
T |
|
| Q |
308 |
ttcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39216654 |
ttcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaa |
39216753 |
T |
|
| Q |
408 |
aatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttg |
507 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
39216754 |
aatactaaaaattctttggtggttctcggttttcttctgcttttgtcaatttatggattggttacttcttttggtgaagatgaagttttggagctttttg |
39216853 |
T |
|
| Q |
508 |
catctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaatgctttgg |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39216854 |
catctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaatgctttgg |
39216947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 8 - 591
Target Start/End: Complemental strand, 39196993 - 39196412
Alignment:
| Q |
8 |
attgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagt |
107 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||| | | ||| ||||||||||||||||||||| |||||||| ||||| ||||| |||||| ||| |
|
|
| T |
39196993 |
attgttattatcattta-tgatgcttctataaatatg-gagagcttaaatatctgctatctaaatatgcagttgaatcttacatggacgatcaatcaagc |
39196896 |
T |
|
| Q |
108 |
cacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagctaatttgctagactcat |
207 |
Q |
| |
|
| ||| ||| | || |||||||||||||||||||| | |||||||||||| ||||| |||||||| ||| |||||||| |||| ||| ||| |||| |
|
|
| T |
39196895 |
cgtgcctttggtggaagaagtttgcagttggacacaagtgagaaaactgatggagttgagtcacttttcaacagtattttagttaatctgcaagaatcat |
39196796 |
T |
|
| Q |
208 |
cagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatattta |
307 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||||| | |||||| ||| | |||||||| ||||||||| |||||| ||||||||| || || |
|
|
| T |
39196795 |
cagatccatcaaaacttgttttggaaatgatactgaaccccatcattccacagtgggaaaagggagataatgctgtggttattgttgattaccaaatcta |
39196696 |
T |
|
| Q |
308 |
ttcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaa |
407 |
Q |
| |
|
| ||| ||||||||||||| ||||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
39196695 |
tctgctggaacaactgatgagaatctcaccagatattaaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaatgac |
39196596 |
T |
|
| Q |
408 |
aatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttg |
507 |
Q |
| |
|
|||||| ||||||||||||||||||| || ||||| |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
39196595 |
aatactgaaaattctttggcggttcttggctttctgctgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttg |
39196496 |
T |
|
| Q |
508 |
catctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttaga |
591 |
Q |
| |
|
||| |||||||| | |||| || || | || ||||||| | ||||||||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
39196495 |
catttgttgctctgaacaatattgcggtggagctgtttggaagcctgggttttgcaaacagagtttctggtatgataatttaga |
39196412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 599
Target Start/End: Original strand, 39370822 - 39371405
Alignment:
| Q |
16 |
tatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagtcacgccac |
115 |
Q |
| |
|
|||||||||| |||||||||||||| ||| || |||| ||||| ||||||||| ||||||||| |||| |||||| |||||||||||| | |
|
|
| T |
39370822 |
tatcatttaccaatgcttctataaatgtgaggcagcttaattatctattatctaaatatgcagttgcgtcttatatggatgatcaattaagtcgtaactt |
39370921 |
T |
|
| Q |
116 |
tggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagctaatttgctagactcatcagatcca |
215 |
Q |
| |
|
||| | |||||||||||||||| ||| || | |||||||||||| | ||| ||||||| | | || |||||||| | || ||||||| |||||||||||| |
|
|
| T |
39370922 |
tggtggaacaagtttgcagttgcacataagtgagaaaactgatggacttgagtcacttcatactggtattttagttgatctgctagaatcatcagatcca |
39371021 |
T |
|
| Q |
216 |
tcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatatttattcgctag |
315 |
Q |
| |
|
|||||| |||||||||||||||||||||| | | | ||||| || |||||||||||||||||| ||| ||||||||||||||||| || ||||| |
|
|
| T |
39371022 |
tcaagatttgttttggatatgatacagaataccattgttccactgagtaagaagggagacaatgttgtaattattgctgattaccaaatcctgctgctag |
39371121 |
T |
|
| Q |
316 |
aacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaa |
415 |
Q |
| |
|
||||||| |||||||||||||| ||||| | |||||||||||||| |||||||||||||||||| ||||| ||||| | ||||||| ||||||| ||| |
|
|
| T |
39371122 |
aacaacttatgaaaatctcaccaaatattgagccttgtgtaagagatgaagcattgaagctagcacttgatatgaaagccaacatgaaagaaaatagtaa |
39371221 |
T |
|
| Q |
416 |
aaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgtt |
515 |
Q |
| |
|
|||| |||||| |||||| |||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||| |||||||||||||||||| |||| |
|
|
| T |
39371222 |
aaatcctttggtggttcttggttttctattgcttttgtcaaattatggattggttacttcttttgatgaagatgaacttttggagctttttgcatttgtt |
39371321 |
T |
|
| Q |
516 |
gctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaatgcttt |
599 |
Q |
| |
|
||| |||||||||||||||| || ||||||| ||| |||||||||| || |||| ||||||||||||||| |||| ||||||| |
|
|
| T |
39371322 |
gctgagcacaagatagctatggagctgtttggaaccatgggttttgccaacaaagcttctggtatgttaatgtagacatgcttt |
39371405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 59 - 582
Target Start/End: Complemental strand, 39397086 - 39396563
Alignment:
| Q |
59 |
tctgctatctaaatttgcagttgcatctttaatggattatcaattaagtcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgat |
158 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||| | | |||||||| ||| || | |||||||||||||||||||| | | | ||||| ||| |
|
|
| T |
39397086 |
tctgctatctaaacatgcagttgcatcctacatggatgaccgattaagtcctaccattgatggaacaagtttgcagttggacatgagtgataaaaccgat |
39396987 |
T |
|
| Q |
159 |
gaagttgtgtcactttacaatgatattttagctaatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattccat |
258 |
Q |
| |
|
| ||||| ||||||| |||||| |||| | | || ||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | ||||||| |
|
|
| T |
39396986 |
ggagttgagtcacttcgcaatgacatttatgtttatctgctagaatcatcagatccatcaagacttgttttggatataatacaaaaccccattattccac |
39396887 |
T |
|
| Q |
259 |
tgtgtaagaagggagacaatgctgtgattattgctgattaccatatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaag |
358 |
Q |
| |
|
||||||||||||||||||||| |||| |||||| ||| ||| || || ||||||| ||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
39396886 |
tgtgtaagaagggagacaatggtgtggttattgaggatagccacatctacgtgctagaagaactgatgagaatctcaccaactattagaccttgtgtaag |
39396787 |
T |
|
| Q |
359 |
agaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatt |
458 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| | || |||| || ||||||||| ||||||||||||||||||| |||||| | |||||||||||||| |
|
|
| T |
39396786 |
agaagaagcactgaagctagcacatgatttgagagcttacattagagaaaatactgaaaattctttggcggttcttggttttttgttgcttttgtcaatt |
39396687 |
T |
|
| Q |
459 |
tatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggtt |
558 |
Q |
| |
|
||||||||| || ||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||| |
|
|
| T |
39396686 |
tatggattgcttacttctttcgatgaagatgaagttttggagctttttgcatcggttgctcagcacaagacagctatggagctgtttgagaccctgggtt |
39396587 |
T |
|
| Q |
559 |
ttgcaaataaagtttctggtatgt |
582 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39396586 |
ttgcaaataaagtttctggtatgt |
39396563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 591
Target Start/End: Original strand, 39223412 - 39223991
Alignment:
| Q |
8 |
attgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagt |
107 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| || ||| |||||||||| |||||||||| |||||||||||||| ||| || |||||| |||| |
|
|
| T |
39223412 |
attgtcactatcatttactgatgtttctataaatatgaa-gagcttaaatatctactatctaaatatgcagttgcatcttacatgtatgatcaatcaagt |
39223510 |
T |
|
| Q |
108 |
cacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagctaatttgctagactcat |
207 |
Q |
| |
|
|| ||| ||| | || |||||||||||||| ||||| |||||||||||| ||||| |||||||| ||||| | |||||| |||| ||| ||| |||| |
|
|
| T |
39223511 |
catgcctttggtggaataagtttgcagttgggcacaagcgagaaaactgatggagttgagtcacttttcaatggtgttttagttaatctgcaagaatcat |
39223610 |
T |
|
| Q |
208 |
cagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatattta |
307 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||||| | |||||| |||| | ||||||||||||| |||||||| |||||||||| || | |
|
|
| T |
39223611 |
cagatccatcaaaacttgttttggaaatgatactgaaccccatcattccacggtgtcaaaagggagacaatg---tgattattactgattaccaaatcca |
39223707 |
T |
|
| Q |
308 |
ttcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaa |
407 |
Q |
| |
|
| || ||||||||||||| ||||||||| ||||| ||||||||| |||||| |||||||||||||||||| |||||| ||| ||||||| || |
|
|
| T |
39223708 |
tctacttgaacaactgatgagaatctcaccagatattgaaccttgtgagagagaaaaagcattgaagctagcatatgatttaaaagaaaacatgaaagac |
39223807 |
T |
|
| Q |
408 |
aatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttg |
507 |
Q |
| |
|
|||||| |||| |||||||||||||| |||||||| |||||||||||||||||| |||| ||| ||| |||| ||||||||||||| |||| ||||||| |
|
|
| T |
39223808 |
aatactgaaaaatctttggcggttcttggttttctgctgcttttgtcaatttataaattgcttgattcatttgatgaagatgaagttctggatctttttg |
39223907 |
T |
|
| Q |
508 |
catctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttaga |
591 |
Q |
| |
|
||| |||||||| |||||| || ||| | || ||||||| ||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
39223908 |
catttgttgctctgcacaaaattgctgtggagctgtttggatgcctgggttttgcaaacagagtttctggtatgttaatttaga |
39223991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 8 - 583
Target Start/End: Complemental strand, 39387981 - 39387404
Alignment:
| Q |
8 |
attgtcattatcatttactgatgcttctataaataggagtgaggttaaatat---ctgctatctaaatttgcagttgcatctttaatggattatcaatta |
104 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| || ||| |||| ||| ||||| ||||||| |||||||| ||||| |||||| |||||||| |
|
|
| T |
39387981 |
attgtcactatcatttactgatgcttctgtaaatatgaa-gagcttaattattatctgctttctaaatatgcagttgaatcttacatggatgatcaatta |
39387883 |
T |
|
| Q |
105 |
agtcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagctaatttgctagact |
204 |
Q |
| |
|
|||| ||| ||| | ||||||||||||||||||||||| | ||||||||| | ||||| ||||||||||| ||||||| || | ||| ||| | |
|
|
| T |
39387882 |
agtcgtaccattggtggaacaagtttgcagttggacacaagtgagaaaactggcggagttgaatcactttacaaaagaattttagttagtatgcgagaat |
39387783 |
T |
|
| Q |
205 |
catcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatat |
304 |
Q |
| |
|
|||| || ||||||| ||||||||||||||||||| ||||||| ||||||| ||||| | |||| |||||| |||||||||||||||||||||| || |
|
|
| T |
39387782 |
catcggacccatcaaaacttgttttggatatgatattgaaccctgttattccactgtgtcaaaaggttgacaattctgtgattattgctgattaccaaat |
39387683 |
T |
|
| Q |
305 |
ttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagt |
404 |
Q |
| |
|
|| ||||||||||||||||| || |||||| | ||| || ||||||||| | ||||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
39387682 |
ccatatgctagaacaactgatgagaacctcaccaaaaattgaaacttgtgtaaaaaaagaagcattgaagctagcgcgtgatttaaaagctaacatgaaa |
39387583 |
T |
|
| Q |
405 |
gaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagcttt |
504 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||| || ||| || ||||| |||||||||||||||||||||| |
|
|
| T |
39387582 |
gaaaatactgaaaattctttggccgttcttggttttctgctgcttttgtcaatttatgggctgcttgattattttgacgaagatgaagttttggagcttt |
39387483 |
T |
|
| Q |
505 |
ttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgtt |
583 |
Q |
| |
|
|||||| ||||||| |||| | || ||| | || || |||| | |||||||||||||| | |||||| |||||||| |
|
|
| T |
39387482 |
ttgcatttgttgctatgcacgaaattgctgtggagctatttggaagtctgggttttgcaaacagagtttcaggtatgtt |
39387404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 204 - 601
Target Start/End: Original strand, 39152952 - 39153349
Alignment:
| Q |
204 |
tcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccata |
303 |
Q |
| |
|
|||||||||||| ||| | |||| |||||||| ||||||||||| | ||||||| || |||||| |||||| ||||||||||||| | || | | | |
|
|
| T |
39152952 |
tcatcagatccagcaaaaattgtgttggatataatacagaacccaattattccacggtataagaacggagaccatgctgtgattatagatggtagctgca |
39153051 |
T |
|
| Q |
304 |
tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgag |
403 |
Q |
| |
|
| | | ||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| || ||| |||||||||| |||| || | |
|
|
| T |
39153052 |
tctttctgctagaacaactgatgagaatctcaccgaagattaaaccttgtgtaagagaagaagcattgaaactcgcacatgatttgaaagctaaaataaa |
39153151 |
T |
|
| Q |
404 |
tgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctt |
503 |
Q |
| |
|
||||||||| |||||||||||| |||||| |||||||| ||| ||||||| ||||||||||||||| ||||||| | | |||||||||| ||||||||| |
|
|
| T |
39153152 |
agaaaatactgaaaattctttggtggttcttggttttctactggttttgtcgatttatggattggttacttctttcgataaagatgaagtcttggagctt |
39153251 |
T |
|
| Q |
504 |
tttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaatgctttgg |
601 |
Q |
| |
|
||||||| ||||||||| ||||||| ||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
39153252 |
tttgcatttgttgctcaacacaagactgctgtggaactatttcggaccctgggttttgcaaataaagtttctggtatgttaatttagacatgctttgg |
39153349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 8 - 526
Target Start/End: Complemental strand, 39206226 - 39205709
Alignment:
| Q |
8 |
attgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagt |
107 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||| || || |||||||||| || || |||| |||||||||||||| ||| || |||||| ||| |
|
|
| T |
39206226 |
attgtcactatcatttactgatgtttccataaatttgaaa-agcttaaatatctactttcaaaatatgcagttgcatcttacatgcatgatcaatctagt |
39206128 |
T |
|
| Q |
108 |
cacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagctaatttgctagactcat |
207 |
Q |
| |
|
| ||| ||| | ||||||| ||||||||| ||||| |||||||||| | |||| || |||||||||| |||||||| |||| ||| ||| ||| |
|
|
| T |
39206127 |
cgtgcctttggtggaacaagtctgcagttgggcacaagcgagaaaactgacggagttcaatctctttacaatggtattttagttaatctgcaagaatcag |
39206028 |
T |
|
| Q |
208 |
cagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatattta |
307 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||| |||||| | | |||| |||| | |||||||| |||| ||||||||||||||||||||| || || |
|
|
| T |
39206027 |
cagatccatcaaaacttgttttggaaatgatactgaaccccatcactccactgtgccaaaagggagataatgttgtgattattgctgattaccaaatata |
39205928 |
T |
|
| Q |
308 |
ttcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaa |
407 |
Q |
| |
|
| ||| ||||||||||||| ||||||||| |||| |||||||||| |||||| |||||||||||||||||||||| |||||| |||| |||| ||| |
|
|
| T |
39205927 |
tctgcttgaacaactgatgagaatctcaccagttattgaaccttgtgtgagagaaaaagcattgaagctagcatttgacttgaaagctaagatgaaagaa |
39205828 |
T |
|
| Q |
408 |
aatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttg |
507 |
Q |
| |
|
|||||| |||||||| |||||||||| |||||||| ||||||||||| |||||| |||| ||| |||||||| | ||||||||||||| ||| |||| | |
|
|
| T |
39205827 |
aatactgaaaattctatggcggttcttggttttctactgcttttgtcgatttataaattgcttgattcttttgataaagatgaagttttcgagattttgg |
39205728 |
T |
|
| Q |
508 |
catctgttgctcagcacaa |
526 |
Q |
| |
|
||| |||||||| |||||| |
|
|
| T |
39205727 |
catttgttgctctgcacaa |
39205709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 191 - 601
Target Start/End: Original strand, 39138526 - 39138935
Alignment:
| Q |
191 |
taatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattatt |
290 |
Q |
| |
|
|||| ||| ||| |||||||||||| ||| | ||||||||||||| |||||||| || | ||||||| ||||||||| ||||| |||||||||||||| |
|
|
| T |
39138526 |
taatctgcaagaatcatcagatccagcaaaagttgttttggatataatacagaagccaattattccacggtgtaagaatggagaacatgctgtgattatt |
39138625 |
T |
|
| Q |
291 |
gctgattaccatatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttga |
390 |
Q |
| |
|
| |||| | || | | ||||||||||||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||||| || || ||| |
|
|
| T |
39138626 |
gatgatggctgcatctttctgctagaacaactgatgagaatctcaccgaagattaaacctgatgtaagagaagaagcattgaagctagcacttaatctga |
39138725 |
T |
|
| Q |
391 |
aatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatga |
490 |
Q |
| |
|
|| ||||||||| |||||||| |||||||| ||| ||||||||||||||| ||| |||||||| |||||| |||| || ||| ||||| ||||||||| |
|
|
| T |
39138726 |
aagctaacatga---aaaatactgaaaattctctggtggttctcggttttctactgattttgtcagtttatgaattgcttacttattttgatgaagatga |
39138822 |
T |
|
| Q |
491 |
agttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatg--ttaattt |
588 |
Q |
| |
|
||| ||||||||||| ||| ||||||||||||||||| |||| | ||||||||| ||||||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
39138823 |
agtcttggagcttttcacatttgttgctcagcacaagacagctgtggaactgtttaagaccctgggttttgcaaataaactttcaggtatgttttaattt |
39138922 |
T |
|
| Q |
589 |
agaaatgctttgg |
601 |
Q |
| |
|
||| ||| ||||| |
|
|
| T |
39138923 |
agacatggtttgg |
39138935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 224 - 584
Target Start/End: Complemental strand, 39421452 - 39421095
Alignment:
| Q |
224 |
tgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatatttattcgctagaacaactg |
323 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | || ||||||||||||||||| || |||||||| || |||| || | | ||||||||||||| |
|
|
| T |
39421452 |
tgttttggatataatacagaaccccattattcaaaagtataagaagggagacaatgatgcgattattgaagagaaccacatctttctgctagaacaactg |
39421353 |
T |
|
| Q |
324 |
atgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctt |
423 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||| |||||||||||||||||| || ||||||||||| |||| ||| ||||||||| ||||| || |
|
|
| T |
39421352 |
atgaaaatctcaccacatattaaaacttgtgtaaaagaagaagcattgaagctcgctcttgatttgaaagctaatatggaagaaaatactgaaaataatt |
39421253 |
T |
|
| Q |
424 |
tggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagca |
523 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
39421252 |
tgg---ttctcggttttctactgcttttgtcaatttaccaattggttacttatttcaatgaagatgaagtgttggagctttttgcatttgttgctcagca |
39421156 |
T |
|
| Q |
524 |
caagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgtta |
584 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39421155 |
caagatagcagttgagttgtttgagaccctgggttttgcaaataaagtttctggtaagtta |
39421095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 204 - 601
Target Start/End: Complemental strand, 39473059 - 39472656
Alignment:
| Q |
204 |
tcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccata |
303 |
Q |
| |
|
|||||||||||| ||| | ||||| ||||||| |||| |||||| | ||||||| |||||||||||||||| ||||||||||||||| || | | | | |
|
|
| T |
39473059 |
tcatcagatccagcaaaatttgttctggatataatactgaacccgattattccacggtgtaagaagggagaccatgctgtgattattgatggtagcaaca |
39472960 |
T |
|
| Q |
304 |
tttattcgctagaacaactgatgaaaatctcacc-tcat-----attaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaa |
397 |
Q |
| |
|
| | | | | ||||| ||||||||||||||||| ||| |||| |||||||||| | |||| ||||||||||| ||| ||||||||||| ||| |
|
|
| T |
39472959 |
tctttctgttggaacagctgatgaaaatctcaccgtcactgaagattagcccttgtgtaaaaaaagacgcattgaagctcgcacttgatttgaaagttaa |
39472860 |
T |
|
| Q |
398 |
catgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttg |
497 |
Q |
| |
|
||||| ||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||||| |||| || ||||||||| |||||||||||| ||| |
|
|
| T |
39472859 |
catgaaagaaaatactgaaaattctttggtagttcttggttttctactgcttttgtcaatttatgaattgcttacttcttttgatgaagatgaagtcttg |
39472760 |
T |
|
| Q |
498 |
gagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaatgct |
597 |
Q |
| |
|
||||| || |||| |||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||| |||| ||||| |||||||||| ||| | |
|
|
| T |
39472759 |
gagctcttcgcatttgttgctcagcacaagatagctgtggaactgtttcggaccttgggttttgcaaataaactttcaggtattttaatttagatatggt |
39472660 |
T |
|
| Q |
598 |
ttgg |
601 |
Q |
| |
|
|||| |
|
|
| T |
39472659 |
ttgg |
39472656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 223 - 584
Target Start/End: Complemental strand, 39380764 - 39380403
Alignment:
| Q |
223 |
ttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatatttattcgctagaacaact |
322 |
Q |
| |
|
||||||| ||||| ||||| || || | || |||| |||| |||||||||||||||||||||||| || |||| || || | | |||||||||||| |
|
|
| T |
39380764 |
ttgttttagatataatacataaaccgattaatccactgtgcaagaagggagacaatgctgtgattttttatgatagccgcatctttctgctagaacaact |
39380665 |
T |
|
| Q |
323 |
gatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattct |
422 |
Q |
| |
|
||||| | ||||||| ||||| || ||||||||||||||||||| ||| ||||||| ||||||||||| || |||| || || |||||| || ||||| |
|
|
| T |
39380664 |
gatgagagtctcaccgaatattgaagattgtgtaagagaagaagcactgacgctagcacttgatttgaaagcttacataagagagaatactgaagattct |
39380565 |
T |
|
| Q |
423 |
ttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagc |
522 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||||||| || ||||||| | |||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
39380564 |
gtggcggttcttggatttctactgcttttgtcaatttatggattgcttacttctttcgatgaagatgaaattttggagctttttgcattggttgctcagc |
39380465 |
T |
|
| Q |
523 |
acaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgtta |
584 |
Q |
| |
|
||||||||||||| || ||||| | |||||||||||||||||| ||||||||||| |||| |
|
|
| T |
39380464 |
acaagatagctatggagatgtttcgggccctgggttttgcaaatatagtttctggtaagtta |
39380403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 204 - 600
Target Start/End: Original strand, 39604209 - 39604605
Alignment:
| Q |
204 |
tcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccata |
303 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||||| || | ||||| | || ||||| ||||||||||||||| ||||||| |||| | | |
|
|
| T |
39604209 |
tcatcagatccatcaaaagttgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattgatgatagagaca |
39604308 |
T |
|
| Q |
304 |
tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgag |
403 |
Q |
| |
|
|| | ||| |||||||||||| |||| ||| |||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||| || |
|
|
| T |
39604309 |
ttcttctgctcaaacaactgatgagaatcaaaccacatattaaacctcgtgtaagagaagaagcaatgaagctagcacttaatttgaaatctaacataag |
39604408 |
T |
|
| Q |
404 |
tgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctt |
503 |
Q |
| |
|
||||||||| |||||| |||| ||||| |||||||| || ||| |||||||||||||||||| | ||||||| | ||||||||||||||| ||||| |
|
|
| T |
39604409 |
tgaaaataccgaaaatttggtggcagttctgggttttctactccttgtgtcaatttatggattggctccttctttcgatgaagatgaagttttaaagctt |
39604508 |
T |
|
| Q |
504 |
tttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaatgctttg |
600 |
Q |
| |
|
|| | | || ||||||| ||||||||||| | || ||||||| || ||||||||||| |||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
39604509 |
ttcgagtttgctgctcaggacaagatagctgtagagctgtttggaactctgggttttgccgataaagcttctggtatgttagtttagaaatgttttg |
39604605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 204 - 572
Target Start/End: Complemental strand, 44895396 - 44895028
Alignment:
| Q |
204 |
tcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccata |
303 |
Q |
| |
|
|||||| |||| ||| ||||||||||||||| ||||||||||||| ||| ||| || ||||||||| ||||||| | || |||||| ||||| | | |
|
|
| T |
44895396 |
tcatcaaatcctgcaaaacttgttttggatataatacagaaccctagtatgccactgagtaagaaggatgacaatgatttggttattgatgattggcgca |
44895297 |
T |
|
| Q |
304 |
tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgag |
403 |
Q |
| |
|
| ||| ||||||| ||||||| ||| ||||| |||||||||| ||||||||||| ||||||||||||||||| | | || ||| ||||||| | |
|
|
| T |
44895296 |
tctatctgctagaaacactgatgggaatgtcaccaattattaaacctcgtgtaagagaacaagcattgaagctagcacataaattcaaagctaacataaa |
44895197 |
T |
|
| Q |
404 |
tgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctt |
503 |
Q |
| |
|
| ||||||| |||||||||||| |||||| |||||||| |||||||||||||||||||||||| || ||||||| | ||||| ||||||||||||||| |
|
|
| T |
44895196 |
aggaaatactgaaaattctttggtggttcttggttttctactgcttttgtcaatttatggattgattacttctttcgatgaaggcgaagttttggagctt |
44895097 |
T |
|
| Q |
504 |
tttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtt |
572 |
Q |
| |
|
||||||| |||||||||||||||||||||| | ||||| ||| |||||| ||||||||| |||||||| |
|
|
| T |
44895096 |
tttgcatttgttgctcagcacaagatagctgtggaactttttcggaccctcggttttgcacataaagtt |
44895028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 206 - 593
Target Start/End: Original strand, 39099482 - 39099869
Alignment:
| Q |
206 |
atcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatatt |
305 |
Q |
| |
|
|||||||||||||| | | ||||||||||| |||||||| || | ||||| | || ||||| ||||||||||||||| ||||||| ||| | ||| |
|
|
| T |
39099482 |
atcagatccatcaaaagtcgttttggatataatacagaatcccattattcaaaagtataagatgggagacaatgctgtaattattgatgaaagagacatt |
39099581 |
T |
|
| Q |
306 |
tattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtg |
405 |
Q |
| |
|
| ||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||| ||| || | ||||||||| || |||| |
|
|
| T |
39099582 |
cttctgctcgaacaactgatgagaatctcaccacatatcaaaccttgtgtaagagaagaagcgatgaagctggcacttaagttgaaatcttttataagtg |
39099681 |
T |
|
| Q |
406 |
aaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttt |
505 |
Q |
| |
|
||| |||| ||||||| |||||||||| |||||||| || ||| ||||||||||| ||||| | ||||||||| ||||||||||||||| ||||||| |
|
|
| T |
39099682 |
aaactactgaaaattcggtggcggttcttggttttctactccttctgtcaatttataaattggctccttcttttgatgaagatgaagttttaaagctttt |
39099781 |
T |
|
| Q |
506 |
tgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaa |
593 |
Q |
| |
|
|| | || ||||||||||||||||||| | | || |||| | ||||||||||| |||||| ||||||||||||| |||||||| |
|
|
| T |
39099782 |
tgggtttgctgctcagcacaagatagctgtaaagctctttggaattctgggttttgccgataaagcttctggtatgttagtttagaaa |
39099869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 367 - 582
Target Start/End: Complemental strand, 39478420 - 39478206
Alignment:
| Q |
367 |
cattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggatt |
466 |
Q |
| |
|
|||||||||||||| |||||||||| || |||| || ||||||||| ||||||||| ||| ||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
39478420 |
cattgaagctagcacatgatttgaaagcttacatcagagaaaatactgaaaattcttcggcagttcttgattttctactgcttttgtcaatttatggatt |
39478321 |
T |
|
| Q |
467 |
ggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaat |
566 |
Q |
| |
|
| || ||||||| | |||| ||||||||||||| ||||||||||||||||||| ||||||| |||||| || ||||||||||||||||||| |||||| |
|
|
| T |
39478320 |
gcttacttctttcgaagaaggtgaagttttggag-tttttgcatctgttgctcaacacaagacagctatggagttgtttgagaccctgggtttcgcaaat |
39478222 |
T |
|
| Q |
567 |
aaagtttctggtatgt |
582 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
39478221 |
aaagtttttggtatgt |
39478206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 191 - 553
Target Start/End: Original strand, 44624659 - 44625024
Alignment:
| Q |
191 |
taatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattatt |
290 |
Q |
| |
|
|||||||| ||| |||||||||||| ||| | ||||||||||||| |||| |||||| | ||| ||| | |||||| |||||||| |||||||||||| |
|
|
| T |
44624659 |
taatttgcgagaatcatcagatccagcaaaaattgttttggatataatactgaaccccattatcccacttcctaagaaaggagacaaagctgtgattatt |
44624758 |
T |
|
| Q |
291 |
gctgatta---ccatatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatt |
387 |
Q |
| |
|
| |||| | || || ||| ||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| | |
|
|
| T |
44624759 |
gatgatgaaagccgcatctatctgctagaaaaactgatgacaatctcaccaaatattaaaccttgtgtaagagatgaagcattgaagctagcgcgtgagt |
44624858 |
T |
|
| Q |
388 |
tgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaaga |
487 |
Q |
| |
|
||||| ||||||||| ||||||||| |||||| ||||| ||||||||| ||||| || ||||||| |||||||||||| | ||| ||||| |||||| |
|
|
| T |
44624859 |
tgaaagctaacatgaaagaaaatactgaaaattatttggaggttctcggatttctattgattttgtcgatttatggattgcatacttattttgatgaaga |
44624958 |
T |
|
| Q |
488 |
tgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccct |
553 |
Q |
| |
|
|||||| | ||||||||| |||||||||| ||||||| ||| ||||||||||||||||| |
|
|
| T |
44624959 |
tgaagtctaaaagctttttggatctgttgctggatacaagatggctgaagaactgtttgagaccct |
44625024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 345 - 583
Target Start/End: Complemental strand, 39413174 - 39412941
Alignment:
| Q |
345 |
aaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttc |
444 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||||||| ||||| ||| |||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
39413174 |
aaaccttgtgtaa---aagaagcattgaagctagcacttgatttgaaagctaacttgaaagaaaataccgaaaactctttggcggttcttagttttctgt |
39413078 |
T |
|
| Q |
445 |
tgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtt |
544 |
Q |
| |
|
||||||||||| ||| |||||||||| ||| ||| | |||||||||| | |||||||||||||||| ||||||||| |||||||||||| | ||||| |
|
|
| T |
39413077 |
tgcttttgtcagtttgtggattggttacttttttggatgaagatgaaatcttggagctttttgcatttgttgctcaacacaagatagctgcgaagctgtt |
39412978 |
T |
|
| Q |
545 |
tgagaccctgggttttgcaaataaagtttctggtatgtt |
583 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
39412977 |
tggaaccctgggttttgcaa--aaagtttctggtatgtt |
39412941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 204 - 600
Target Start/End: Original strand, 2362575 - 2362968
Alignment:
| Q |
204 |
tcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccata |
303 |
Q |
| |
|
|||||||||||||||| | |||||| ||||| || |||||||| | |||||| ||||||| ||||| |||| ||| ||||||| |||| |||| | |
|
|
| T |
2362575 |
tcatcagatccatcaaaagatgttttagatataatccagaaccccatcattccacagtgtaag---ggagaaaatgttgtaattattgatgatcaccaca |
2362671 |
T |
|
| Q |
304 |
tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgag |
403 |
Q |
| |
|
|| || ||| ||||||||||||| ||||||||| ||| |||||||| ||| ||||||||||| ||||||||||| || | ||||| || |||| | |
|
|
| T |
2362672 |
ttgatctgctcgaacaactgatgagaatctcaccacatgttaaacctcatgtgcgagaagaagcaatgaagctagcacttaaactgaaagcttacattgg |
2362771 |
T |
|
| Q |
404 |
tgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctt |
503 |
Q |
| |
|
||||||||| ||||| | || | ||||| || ||| | || ||| |||||||||||||||||||| ||||||| | |||||||||| |||| ||||| |
|
|
| T |
2362772 |
cgaaaatactgaaaatccagtgccagttctggggtttttgctccttctgtcaatttatggattggtttcttctttcgatgaagatgaaattttaaagctt |
2362871 |
T |
|
| Q |
504 |
tttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttagaaatgctttg |
600 |
Q |
| |
|
|||| | || |||||| ||||||||| || | || ||||||| ||| ||||||| ||| |||||||||||||||||||| |||||||||| |||| |
|
|
| T |
2362872 |
tttgggtttgctgctcaacacaagatatctgtagagctgtttgggactatgggtttggcacataaagtttctggtatgttagtttagaaatgttttg |
2362968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 191 - 599
Target Start/End: Original strand, 44615286 - 44615706
Alignment:
| Q |
191 |
taatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattatt |
290 |
Q |
| |
|
|||||||| ||| |||||||||||| ||| ||||||||||||||| |||| |||||||| |||||| || |||||| |||||||| || ||||||||| |
|
|
| T |
44615286 |
taatttgcgagaatcatcagatccagcaaaacttgttttggatataatactaaaccctacgattccactgcctaagaaaggagacaaagcggtgattatt |
44615385 |
T |
|
| Q |
291 |
gctgattaccatatttattcgctagaacaactgatgaaaatctcacc---tcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatt |
387 |
Q |
| |
|
| ||| | || ||| ||||||||||||||||| ||||||||| | ||||||| ||||||||||||| ||||| ||||||||||| | ||| | |
|
|
| T |
44615386 |
gatgaaggctggatctatctgctagaacaactgatgataatctcaccaaatattattaaatcttgtgtaagagatgaagcgttgaagctagcgtgtgagt |
44615485 |
T |
|
| Q |
388 |
tgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaaga |
487 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||| || ||| || ||||| || |||| || ||||| ||||||||| || |||| |||||| |
|
|
| T |
44615486 |
tgaaagctaacatgaaagaaaataccgaaaattctttggaggctcttggatttctattgattttatcgatttacggattggttaattactttgatgaaga |
44615585 |
T |
|
| Q |
488 |
tgaagttttggagctttttgcatctgttgc-tcagc--------acaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggt |
578 |
Q |
| |
|
|||||| || || ||||||| | |||||| || || ||||||||||| | | |||| | ||| |||||||||||||||||||| |||||| |
|
|
| T |
44615586 |
tgaagtcttcaagatttttgcttatgttgcgtctgctgctgaatacaagatagctgtgaagctgtgtaggacactgggttttgcaaataaagtctctggt |
44615685 |
T |
|
| Q |
579 |
atgttaatttagaaatgcttt |
599 |
Q |
| |
|
||||| |||||||||| |||| |
|
|
| T |
44615686 |
atgttgatttagaaattcttt |
44615706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 204 - 569
Target Start/End: Complemental strand, 39493728 - 39493363
Alignment:
| Q |
204 |
tcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccata |
303 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||||||| | |||| | |||||||| |||||| |||||| ||||||| |||| ||| | |
|
|
| T |
39493728 |
tcatcagatccatcaaaagttgttttggatataatacagaaccccattattaaaaagtgtaagataggagacgatgctgcaattattgatgatagccaca |
39493629 |
T |
|
| Q |
304 |
tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgag |
403 |
Q |
| |
|
|| | ||| ||| |||||| |||||||||||| |||||| |||| ||||| |||||||||| ||||||||||| ||||| ||||| ||||||| || |
|
|
| T |
39493628 |
ttcttctgctcgaagaactgaggaaaatctcaccagatattagacctcatgtaaaagaagaagcaatgaagctagcacttgatatgaaagctaacataag |
39493529 |
T |
|
| Q |
404 |
tgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctt |
503 |
Q |
| |
|
| |||| || ||||||| | |||||||| |||||||| || ||| |||||||||||||| ||||| | ||||| | ||| ||||| ||||| |||| |
|
|
| T |
39493528 |
tcaaaacacagaaaattcagttgcggttctaggttttctactccttctgtcaatttatggactggttccatctttcgatgaggatgaggttttaaagcta |
39493429 |
T |
|
| Q |
504 |
tttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaa |
569 |
Q |
| |
|
|||| | |||| |||||||||| || | | | || ||||||| | || ||||||||||| ||||| |
|
|
| T |
39493428 |
tttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagataaa |
39493363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #22
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 39380961 - 39380798
Alignment:
| Q |
8 |
attgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagt |
107 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||| |||||||||||||| |||||| ||| ||||||| |
|
|
| T |
39380961 |
attgtcactatcatttactgacgcttctataaatatgagggagcttaaatatctgctatctaaatatgcagttgcatcttacatggatgatcgattaagt |
39380862 |
T |
|
| Q |
108 |
cacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcac |
171 |
Q |
| |
|
|| ||| ||| | |||||||||||||||||| |||| | ||||||||| || ||||| ||||| |
|
|
| T |
39380861 |
cataccattgggggaacaagtttgcagttggatacaagtgagaaaactgttgcagttgagtcac |
39380798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #23
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 207 - 569
Target Start/End: Complemental strand, 39425819 - 39425457
Alignment:
| Q |
207 |
tcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatattt |
306 |
Q |
| |
|
||||||||||||| | |||||||||| || ||||||||||||| |||| | |||||||| |||||| ||||||| ||||||| ||| ||| ||| |
|
|
| T |
39425819 |
tcagatccatcaaaagttgttttggaaataatacagaaccctattattaaaaagtgtaagatgggagatgatgctgttattattgaggatagccacattc |
39425720 |
T |
|
| Q |
307 |
attcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtga |
406 |
Q |
| |
|
|| ||| | |||| | || ||||||||| |||||| |||| ||||| |||||||||| ||||| ||||| ||||||||||| ||||||| ||| | |
|
|
| T |
39425719 |
atctgctcaatgaacttaggagaatctcaccggatattagacctgatgtaaaagaagaagcaatgaagttagcacttgatttgaaagctaacataagtca |
39425620 |
T |
|
| Q |
407 |
aaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagcttttt |
506 |
Q |
| |
|
||| | | ||||||| ||| ||||| |||||||| || ||| |||||||||||||| ||||| ||||||| | ||||| ||||||||| ||||||| |
|
|
| T |
39425619 |
aaacaatgaaaattcagcggctgttcttggttttctacttcttctgtcaatttatggactggttccttctttcgacgaagaagaagttttgaagcttttc |
39425520 |
T |
|
| Q |
507 |
gcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaa |
569 |
Q |
| |
|
| | |||| |||||||||| ||||| | || ||||||| | || ||||||||||| ||||| |
|
|
| T |
39425519 |
gaacttgtttctcagcacaacttagctgtagagctgtttggggccatgggttttgcagataaa |
39425457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #24
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 206 - 507
Target Start/End: Complemental strand, 39189041 - 39188740
Alignment:
| Q |
206 |
atcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatatt |
305 |
Q |
| |
|
||||||||| |||| | ||||||||||||| ||||||||||| | ||||| | |||| ||| ||||||||||| ||| ||||||| |||| ||| ||| |
|
|
| T |
39189041 |
atcagatccttcaaaagttgttttggatataatacagaaccccattattcaaaagtgtgagatgggagacaatgttgtaattattgatgatagccacatt |
39188942 |
T |
|
| Q |
306 |
tattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtg |
405 |
Q |
| |
|
| ||| | |||||||| |||||||||| | ||||||||| ||||||||| || ||| |||| |||||| ||||||| ||| ||||||||| | |
|
|
| T |
39188941 |
cttctgctcatagtactgatgagaatctcacctgacattaaacctcatgtaagagaggatgcaatgaaactagcacttgatttaaaagctaacatgaaag |
39188842 |
T |
|
| Q |
406 |
aaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttt |
505 |
Q |
| |
|
|||||| | ||||||||||| |||||| |||||||| || ||| | ||||||||||| |||||| ||||||| ||||||||| ||||| ||||||| |
|
|
| T |
39188841 |
aaaataatggaaattctttggtggttcttggttttctactccttctatcaatttatggtttggttccttctttcaatgaagatgatgttttaaagctttt |
39188742 |
T |
|
| Q |
506 |
tg |
507 |
Q |
| |
|
|| |
|
|
| T |
39188741 |
tg |
39188740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #25
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 204 - 579
Target Start/End: Original strand, 39144489 - 39144864
Alignment:
| Q |
204 |
tcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccata |
303 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| ||||||||||| | |||| | |||||||| |||||| ||||||| ||||||| |||| ||| | |
|
|
| T |
39144489 |
tcatcagatccatcaaaagttgttttggatataatacagaacccgattattaaaaagtgtaagataggagacgatgctgtaattattgatgatagccaca |
39144588 |
T |
|
| Q |
304 |
tttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgag |
403 |
Q |
| |
|
|| | ||| | |||||| ||||||||||| ||||||||||| ||||| |||||||||| ||||||||||| ||||||||||| | || || || |
|
|
| T |
39144589 |
ttcttctgctcaaggaactgaggaaaatctcactagatattaaacctcatgtaaaagaagaagcaatgaagctagcacttgatttgaaagccaatataag |
39144688 |
T |
|
| Q |
404 |
tgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctt |
503 |
Q |
| |
|
| |||| || ||||||| |||| |||| |||||||| || ||| ||||||||||||| ||| | | ||||| ||||||||| ||||| ||||| |
|
|
| T |
39144689 |
tcaaaacacagaaaattcagcggcgattctaggttttctactccttctgtcaatttatgggctgggtccatctttcaatgaagatgatgttttaaagctt |
39144788 |
T |
|
| Q |
504 |
tttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggta |
579 |
Q |
| |
|
|||| | |||| |||||||| | |||||| | || ||||||| | || |||| |||||||||||| | ||||||| |
|
|
| T |
39144789 |
tttggacttgtttctcagcacgacatagctgtagagctgtttggggccttgggatttgcaaataaaatatctggta |
39144864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 315 - 409
Target Start/End: Original strand, 39126490 - 39126584
Alignment:
| Q |
315 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaa |
409 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||||||| || | |||||||||||||| |||||||| |
|
|
| T |
39126490 |
gaacaactgatgagaatctcactaaatattgaacctcgtgtaagagaagaagcaatgaagctagctcttaaattgaaatctaacataagtgaaaa |
39126584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #27
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 137
Target Start/End: Complemental strand, 39473187 - 39473102
Alignment:
| Q |
52 |
ttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagtcacgccactggcgaaacaagtttgcagttg |
137 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||| |||||| |||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
39473187 |
ttaaatatctgctatctaaatatgcagctacatcttacatggatgatcaattaagtccaaccactgatgaaacaagtttgcagttg |
39473102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 551 - 591
Target Start/End: Original strand, 39452264 - 39452304
Alignment:
| Q |
551 |
cctgggttttgcaaataaagtttctggtatgttaatttaga |
591 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39452264 |
cctgggttttgcaaataaattttctggtatgttaatttaga |
39452304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #29
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 472 - 583
Target Start/End: Complemental strand, 39504063 - 39503952
Alignment:
| Q |
472 |
cttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagt |
571 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||| | || |||||||||| |||||||| | || ||||||| || || ||||||||| |||||| |
|
|
| T |
39504063 |
cttctttcgatgaagatgaagttttcaagctttttggttttgctgctcagcacgagatagctgtagagctgtttggaactcttggttttgcagataaagc |
39503964 |
T |
|
| Q |
572 |
ttctggtatgtt |
583 |
Q |
| |
|
||| |||||||| |
|
|
| T |
39503963 |
ttccggtatgtt |
39503952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 394 - 466
Target Start/End: Complemental strand, 31606606 - 31606534
Alignment:
| Q |
394 |
ctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggatt |
466 |
Q |
| |
|
||||||||| ||||||| || ||||||||||| |||||| |||||||| || ||| ||||||||||||||| |
|
|
| T |
31606606 |
ctaacatgaaagaaaataatagaaattctttggtggttcttggttttctactccttccgtcaatttatggatt |
31606534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 39162968 - 39163171
Alignment:
| Q |
8 |
attgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagt |
107 |
Q |
| |
|
||||||| ||||||||||||||| ||| |||||| || || |||||||||| || || |||| |||||||||||||| ||| || |||||| ||| |
|
|
| T |
39162968 |
attgtcactatcatttactgatgtttccataaatttgaaa-agcttaaatatctactttcaaaatatgcagttgcatcttacatgcatgatcaatctagt |
39163066 |
T |
|
| Q |
108 |
cacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagctaatttgctagactcat |
207 |
Q |
| |
|
| ||| ||| | ||||||| ||||||||| ||||| |||||||||| | |||| || |||||||||| |||||||| |||| ||| ||| ||| |
|
|
| T |
39163067 |
cgtgcctttggtggaacaagtctgcagttgggcacaagcgagaaaactgacggagttcaatctctttacaatggtattttagttaatctgcaagaatcag |
39163166 |
T |
|
| Q |
208 |
cagat |
212 |
Q |
| |
|
||||| |
|
|
| T |
39163167 |
cagat |
39163171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 39138367 - 39138496
Alignment:
| Q |
8 |
attgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagt |
107 |
Q |
| |
|
|||||||| |||||| ||| |||||||| ||||| ||| || |||| | ||||||||| |||| ||||||||||||| | |||| ||||||||||| |
|
|
| T |
39138367 |
attgtcatcttcatttgctgttgcttctaaaaatatgagggatcttaattctctgctatccaaatatgcagttgcatctaacacggatgatcaattaagt |
39138466 |
T |
|
| Q |
108 |
cacgccactggcgaaacaagtttgcagttg |
137 |
Q |
| |
|
| ||| || | |||||||||||||||| |
|
|
| T |
39138467 |
ccaaccattgatggaacaagtttgcagttg |
39138496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 591
Target Start/End: Original strand, 33561989 - 33562569
Alignment:
| Q |
10 |
tgtcattatcatttactgatgcttctataaataggagtgaggttaaatatctgctatctaaatttgcagttgcatctttaatggattatcaattaagtca |
109 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| || ||| |||||||||| |||||||||| |||||||||||||| |||||| ||||| ||||| |
|
|
| T |
33561989 |
tgtcactatcatttactgatgtttctataaatatgaa-gagcttaaatatctactatctaaatatgcagttgcatcttacatggatggtcaatcaagtcg |
33562087 |
T |
|
| Q |
110 |
cgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactttacaatgatattttagctaatttgctagactcatca |
209 |
Q |
| |
|
||| ||| |||||||||||||||||||||| | |||||||||||| ||||| |||||||||||||| ||||||||||||| ||| ||| |||||| |
|
|
| T |
33562088 |
tgcctttggtagtacaagtttgcagttggacacaagtgagaaaactgatggagttgagtcactttacaatggtattttagctaatctgcaagaatcatca |
33562187 |
T |
|
| Q |
210 |
gatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccatatttatt |
309 |
Q |
| |
|
|||||||||| |||||||||||| ||||||| |||||| | ||||| ||||| | ||||||||||||| ||| ||||||| ||||||||| || ||| |
|
|
| T |
33562188 |
gatccatcaaaacttgttttggaaatgatactgaaccccatctttccactgtgtcaaaagggagacaatgttgtcattattgttgattaccaaatctatc |
33562287 |
T |
|
| Q |
310 |
cgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaa |
409 |
Q |
| |
|
|| ||||||||||||| ||||||||| ||||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
33562288 |
ttctggaacaactgatgagaatctcaccagatattgaaccttgtgtgagaaaagaagcattgaagctagcatttgatttgaaagctaacatgaaagaaaa |
33562387 |
T |
|
| Q |
410 |
tactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgca |
509 |
Q |
| |
|
|||| || || |||||||||||| |||||||| ||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
33562388 |
tactgaattttttttggcggttcttggttttctgatgcttttgtcaatttataaattgcttgattcttttgatgaagatgaagttttggagctttttgca |
33562487 |
T |
|
| Q |
510 |
tctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgttaatttaga |
591 |
Q |
| |
|
| |||||||| |||||| || || | || |||||||| | ||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
33562488 |
tttgttgctctgcacaaaattgccgtggagctgtttgaaagcctgggttttgcaaacagagtttctggtatgttaatttaga |
33562569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 191 - 579
Target Start/End: Original strand, 17060526 - 17060914
Alignment:
| Q |
191 |
taatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattatt |
290 |
Q |
| |
|
|||||||| ||| ||||| |||||||||| | ||||||||||| | ||| |||||| | ||||||| | ||||||||||||||| | |||||||||| |
|
|
| T |
17060526 |
taatttgcaagaatcatcggatccatcaaaaattgttttggatgtaataatgaaccccattattccactacctaagaagggagacaaagttgtgattatt |
17060625 |
T |
|
| Q |
291 |
gctgattaccatatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttga |
390 |
Q |
| |
|
| ||| || || | | ||||||||||||||||| ||| ||||| |||||||| ||||||||| ||| ||||| |||||||||||| ||| |||| |
|
|
| T |
17060626 |
gatgaaagccgcatctttatgctagaacaactgatgataatgtcaccaaatattaaatcttgtgtaaaagacgaagctttgaagctagcacatgagttga |
17060725 |
T |
|
| Q |
391 |
aatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatga |
490 |
Q |
| |
|
|| ||||||| | | ||||||| || |||| |||| ||||||||| ||||| || | ||||| ||||||||||| || ||| ||||| | ||||||| |
|
|
| T |
17060726 |
aagctaacataaaagcaaatactgaatattcattggaggttctcggatttctgttgatcttgtcggtttatggattgtttacttattttgatcaagatga |
17060825 |
T |
|
| Q |
491 |
agttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggta |
579 |
Q |
| |
|
||| ||||| |||||||||||||||||| ||||||||||| || | || |||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
17060826 |
agtcttggatctttttgcatctgttgctgagcacaagatatctgtggagctgtttgagaaactaggttttgcaaataaagtgtctggta |
17060914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 74 - 592
Target Start/End: Original strand, 16114130 - 16114648
Alignment:
| Q |
74 |
tgcagttgcatctttaatggattatcaattaagtcacgccactggcgaaacaagtttgcagttggacacaactaagaaaactgatgaagttgtgtcactt |
173 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||||| | | ||| |||||||||||||||| |||||| ||||||||||||| |||| ||||||| |
|
|
| T |
16114130 |
tgcagttgcatcttacatggatgatcagttaagtcatacaattggtagaacaagtttgcagttgtacacaagcgagaaaactgatgacgttgagtcactt |
16114229 |
T |
|
| Q |
174 |
tacaatgatattttagctaatttgctagactcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggag |
273 |
Q |
| |
|
| ||| || ||||| | | || ||| ||| ||| |||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||| |
|
|
| T |
16114230 |
tgcaaagacatttttgtttatctgcaagaatcagcagatccatcaagacttgttttggatataatacagaaccccggtactccactgtgtaagaagggag |
16114329 |
T |
|
| Q |
274 |
acaatgctgtgattattgctgattaccatatttattcgctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaa |
373 |
Q |
| |
|
|||||||||||||||||| ||| | ||| || ||| | ||||| ||||||||| ||| ||||| |||||||||| ||||||||||| |||||||||| |
|
|
| T |
16114330 |
acaatgctgtgattattgatgaatgccacatctatctgttagaagaactgatgagaatatcaccaactattaaacctcgtgtaagagaaaaagcattgaa |
16114429 |
T |
|
| Q |
374 |
gctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgct |
473 |
Q |
| |
|
|||||| ||||||||| || ||||||| || |||||||||||||| | ||| ||| | |||||| | |||||||||||| ||||||||||| | || |
|
|
| T |
16114430 |
gctagcgcgcgatttgaaagcttacatgagagagaatactaaaaattcatcggctgttgttggttttatgctgcttttgtcagtttatggattgctaact |
16114529 |
T |
|
| Q |
474 |
tcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagttt |
573 |
Q |
| |
|
| ||| | | || |||||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||| |||||||||||||||| || |
|
|
| T |
16114530 |
tatttcgataaatgcgaagttttggagctttttgcatctgttgctcagcacaagacagttatggagctgtttgagaccctcggttttgcaaataaagctt |
16114629 |
T |
|
| Q |
574 |
ctggtatgttaatttagaa |
592 |
Q |
| |
|
|||||| |||||||||||| |
|
|
| T |
16114630 |
ctggtacgttaatttagaa |
16114648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 311 - 583
Target Start/End: Original strand, 19808903 - 19809172
Alignment:
| Q |
311 |
gctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaat |
410 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||| |||||||||||||| |||||||||||||| ||||||||||| ||||||||| ||| | |
|
|
| T |
19808903 |
gctagaacaactgatgagaatctcaccgaagattaaacctggtgtaagagaagaaacattgaagctagcacttgatttgaaagctaacatga---aaagt |
19808999 |
T |
|
| Q |
411 |
actaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcat |
510 |
Q |
| |
|
||| |||||||| ||| |||||| |||||||| |||||||||||| |||||| |||| || ||| ||||| |||||||||||| ||||||||||| |||| |
|
|
| T |
19809000 |
actgaaaattctctggtggttcttggttttctactgcttttgtcagtttatgaattgcttacttattttgatgaagatgaagtcttggagcttttcgcat |
19809099 |
T |
|
| Q |
511 |
ctgttgctcagcacaagatagctattgaactgtttgagaccctgggttttgcaaataaagtttctggtatgtt |
583 |
Q |
| |
|
||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
19809100 |
ttgttgctcagcacaagacagccgtggaactgtttcagaccctgggttttgcaaataaactttcaggtatgtt |
19809172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 8e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 312 - 530
Target Start/End: Original strand, 45342966 - 45343184
Alignment:
| Q |
312 |
ctagaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaata |
411 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||| |||| |||||| ||||| ||| | ||||| |
|
|
| T |
45342966 |
ctagaacaactgatgagaatcttgccaagtattaaaccttgtgtaagagaagaagcattcaagctagcacttgagttgaaagctaacgtgaaaggaaata |
45343065 |
T |
|
| Q |
412 |
ctaaaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatc |
511 |
Q |
| |
|
|| |||| || ||| ||||| |||||||| ||| ||||||||||| ||| |||| || ||||||||| | |||||||||| ||||||||||||| ||| |
|
|
| T |
45343066 |
ctgaaaaatcattgaacgttcttggttttctactgattttgtcaattcatgtattgcttacttcttttgataaagatgaagtcttggagctttttgtatc |
45343165 |
T |
|
| Q |
512 |
tgttgctcagcacaagata |
530 |
Q |
| |
|
||||| ||||||||||||| |
|
|
| T |
45343166 |
tgttgttcagcacaagata |
45343184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 350 - 533
Target Start/End: Original strand, 44730154 - 44730337
Alignment:
| Q |
350 |
ttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctcggttttcttctgctt |
449 |
Q |
| |
|
|||||||||||| ||||| |||||||||||| ||| |||||| ||||||| | ||||||||| ||||||||| || ||||||||| ||||| || || |
|
|
| T |
44730154 |
ttgtgtaagagatgaagctttgaagctagcacatgagttgaaagctaacataaaagaaaatactgaaaattcttaggaggttctcggatttctattgatt |
44730253 |
T |
|
| Q |
450 |
ttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaagatagct |
533 |
Q |
| |
|
||| | |||||| ||||| || ||| |||| || ||||||||| | ||||||| |||||||||| | | |||||||||||| |
|
|
| T |
44730254 |
ttgacgatttatagattgcttacttactttgatggagatgaagtctctgagctttacgcatctgttgttgaacacaagatagct |
44730337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 434
Target Start/End: Complemental strand, 44950037 - 44949954
Alignment:
| Q |
351 |
tgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctc |
434 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| ||| ||||||| ||| || | |||||||||||||||||||||| ||||||| |
|
|
| T |
44950037 |
tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctc |
44949954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 315 - 532
Target Start/End: Original strand, 51575989 - 51576206
Alignment:
| Q |
315 |
gaacaactgatgaaaatctcacctcatattaaaccttgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatacta |
414 |
Q |
| |
|
|||||||| |||| ||||||||| ||||| |||||| |||| ||||||||||||||| |||| | |||||||| | |||| |||||||||||| |
|
|
| T |
51575989 |
gaacaactaatgagaatctcaccacatatcaaacctcatgtacaagaagaagcattgaaactagtcctcaatttgaaagcgtacattagtgaaaatactg |
51576088 |
T |
|
| Q |
415 |
aaaattctttggcggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgt |
514 |
Q |
| |
|
||||||| ||| |||||| |||| ||| || ||| |||||||||||||||||||| ||| ||||| | |||||||| ||||| || ||||| || ||| |
|
|
| T |
51576089 |
aaaattccgtggtggttcttggttatctgctccttctgtcaatttatggattggttccttattttgataaagatgaaattttgaagtattttggatttgt |
51576188 |
T |
|
| Q |
515 |
tgctcagcacaagatagc |
532 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
51576189 |
tgctcagcacaaaatagc |
51576206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 204 - 350
Target Start/End: Original strand, 33152039 - 33152182
Alignment:
| Q |
204 |
tcatcagatccatcaagacttgttttggatatgatacagaaccctactattccattgtgtaagaagggagacaatgctgtgattattgctgattaccata |
303 |
Q |
| |
|
|||||||||||||||| | |||||||||||| || |||||||| | ||||||||||||||| ||||||||||||| ||||||| ||||| ||| | |
|
|
| T |
33152039 |
tcatcagatccatcaaaatatgttttggatattatccagaaccccatcattccattgtgtaag---ggagacaatgctgcaattattgatgatttccaca |
33152135 |
T |
|
| Q |
304 |
tttattcgctagaacaactgatgaaaatctcacctcatattaaacct |
350 |
Q |
| |
|
|| ||| ||| ||||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
33152136 |
ttgatttgctcgaacaactgatgagaatctcaccacatgttaaacct |
33152182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 428 - 532
Target Start/End: Original strand, 33152229 - 33152333
Alignment:
| Q |
428 |
ggttctcggttttcttctgcttttgtcaatttatggattggttgcttcttttggtgaagatgaagttttggagctttttgcatctgttgctcagcacaag |
527 |
Q |
| |
|
|||||| |||||||| || ||| ||||||||||||| |||||| | ||||||| ||||||||||||||| ||||||||| | |||||||| |||||| |
|
|
| T |
33152229 |
ggttctgggttttctgctacttctgtcaatttatgggttggtttcatcttttgatgaagatgaagttttaaagctttttggaatcgttgctcaacacaag |
33152328 |
T |
|
| Q |
528 |
atagc |
532 |
Q |
| |
|
||||| |
|
|
| T |
33152329 |
atagc |
33152333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0283 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0283
Description:
Target: scaffold0283; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 351 - 434
Target Start/End: Complemental strand, 6017 - 5934
Alignment:
| Q |
351 |
tgtgtaagagaagaagcattgaagctagcatttgatttgaaatctaacatgagtgaaaatactaaaaattctttggcggttctc |
434 |
Q |
| |
|
||||| ||||| ||||| |||||||||||| ||| ||||||| ||| || | |||||||||||||||||||||| ||||||| |
|
|
| T |
6017 |
tgtgttagagatgaagctttgaagctagcacatgagttgaaatttaaaataaaagaaaatactaaaaattctttggaggttctc |
5934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University