View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594R-Insertion-6 (Length: 502)
Name: NF1594R-Insertion-6
Description: NF1594R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594R-Insertion-6 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 9 - 502
Target Start/End: Original strand, 31988171 - 31988664
Alignment:
| Q |
9 |
tgctttatagattgaaatgaaactcatggaaacagcagcattcatagacctattcacagcaactccaatactaaccccttgtgcccttaacttcaaagga |
108 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31988171 |
tgctttatagattgaaataaaactcatggaaacagcagcattcatagacctattcacagcaactccaatactaaccccttgtgcccttaacttcaaagga |
31988270 |
T |
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| Q |
109 |
aatatctctgaaccatagagccaagtaacaggtgcaagccctatattaaagaaagcaacatagaaatatgttgctataatactaagtgttaaggcccata |
208 |
Q |
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| T |
31988271 |
aatatctctgaaccatagagccaagtaacaggtgcaagccctatattaaagaaagcaacatagaaatatgttgctataatactaagtgttaaggcccata |
31988370 |
T |
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| Q |
209 |
aaacttcttcattggcatgctccaccattgtcaaactgaaccctaaggctgtaagtccaataatcattcctgcagtgctaacttgtaataaccttcttct |
308 |
Q |
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| T |
31988371 |
aaacttcttcattggcatgctccaccattgtcaaactgaaccctaaggctgtaagtccaataatcattcctgcagtgctaacttgtaataaccttcttct |
31988470 |
T |
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| Q |
309 |
accaactttatcaatcaaaaataaagcaagtacaagaaaaataatctttgttaatccaacaccaattgttgcaagcaaaagattttctttacttttaata |
408 |
Q |
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| T |
31988471 |
accaactttatcaatcaaaaataaagcaagtacaagaaaaataatctttgttaatccaacaccaattgttgcaagcaaaagattttctttacttttaata |
31988570 |
T |
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| Q |
409 |
ccagcttttttaaatattttatgactatataacataacagcttcaattccagttgcatgctcgaaaaaatgtattccaactgaagcaattaaca |
502 |
Q |
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| T |
31988571 |
ccagcttttttaaatattttatgactatataacataacagcttcaattccagttgcatgctcgaaaaaatgtattccaactgaagcaattaaca |
31988664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 5e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 10 - 502
Target Start/End: Original strand, 33161341 - 33161833
Alignment:
| Q |
10 |
gctttatagattgaaatgaaactcatggaaacagcagcattcatagacctattcacagcaactccaatactaaccccttgtgcccttaacttcaaaggaa |
109 |
Q |
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||||||||||||||||| ||| |||| |||||| |||||||||| | ||||||||||||||||||||||| | ||||||||||| ||||||||||||| |
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| T |
33161341 |
gctttatagattgaaataaaagtcatagaaacaacagcattcatggttctattcacagcaactccaatacttgctccttgtgccctcaacttcaaaggaa |
33161440 |
T |
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| Q |
110 |
atatctctgaaccatagagccaagtaacaggtgcaagccctatattaaagaaagcaacatagaaatatgttgctataatactaagtgttaaggcccataa |
209 |
Q |
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| T |
33161441 |
atatctctgaactataaacccaagtaataggcccaagcccaatattaaagaaagcaacataggcataagttgcgacgatgctaaggatcaaggcccataa |
33161540 |
T |
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| Q |
210 |
aacttcttcattggcatgctccaccattgtcaaactgaaccctaaggctgtaagtccaataatcattcctgcagtgctaacttgtaataaccttcttcta |
309 |
Q |
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| T |
33161541 |
aacgtttccgttggatttatccaccacggtcaagctaaggcccaatagcgtaagtccaataatcattcctccggtgctaatttgcaaaagtcgtcttcta |
33161640 |
T |
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| Q |
310 |
ccaactttatcaatcaaaaataaagcaagtacaagaaaaataatctttgttaatccaacaccaattgttgcaagcaaaagattttctttacttttaatac |
409 |
Q |
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|||| ||| |||| ||||| ||||||| |||||| |||| ||| |||||||| || || ||||| |||||||| ||||| |||||||||||| |||||| |
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| T |
33161641 |
ccaagtttgtcaagtaaaaacaaagcaattacaaggaaaacaatttttgttaaacctactccaatagttgcaagtaaaagcttttctttacttgtaatac |
33161740 |
T |
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| Q |
410 |
cagcttttttaaatattttatgactatataacataacagcttcaattccagttgcatgctcgaaaaaatgtattccaactgaagcaattaaca |
502 |
Q |
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| T |
33161741 |
cagcttttctgaaaattctcggactatataacataacagcttcaataccagttgcatgttcgaaaaaatgaatcccaactgcagcaattaaca |
33161833 |
T |
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