View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594R-Insertion-8 (Length: 395)
Name: NF1594R-Insertion-8
Description: NF1594R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594R-Insertion-8 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 151 - 395
Target Start/End: Complemental strand, 921826 - 921582
Alignment:
| Q |
151 |
ccatcactcctcatctattagctttccatcgaccaagattttgaaagagtccaactcgtccaccttcacatccagattgaagagaaggatttattctgta |
250 |
Q |
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| T |
921826 |
ccatcactcctcatctattagctttccatcgaccaagattttgaaagagtccaactcgtccaccttcacatccagattgaagtgaaggatttattctgta |
921727 |
T |
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| Q |
251 |
gcgtttgaagccactgtcaaaatattgggcaagctccctccgtccttcatcaactgaattcttagcagtagccaattcctccttaagctcgcccaccttc |
350 |
Q |
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| T |
921726 |
gcgtttgaagccactgtcaaaatattgggcaagctccctccgtacttcatcaactgaattcttagcagtagccaattcctccttaagctcgcccaccttc |
921627 |
T |
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| Q |
351 |
ttcttgtaagaatccttttccagctcaacaacctcttttacctca |
395 |
Q |
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| T |
921626 |
ttcttgtaagaatccttttccagctcaacaacctcttttacctca |
921582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 83
Target Start/End: Complemental strand, 921968 - 921894
Alignment:
| Q |
9 |
gtttttggggtacggattccattttggtttctccaaagagatcgccagagtacgttaaattacaaaaccagccac |
83 |
Q |
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| T |
921968 |
gtttttggggtgtggattccattttggtttctccaaagagatcgctagagtacgttaagttacaaaaccagccac |
921894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 15584011 - 15583979
Alignment:
| Q |
9 |
gtttttggggtacggattccattttggtttctc |
41 |
Q |
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| T |
15584011 |
gtttttgggatacggattccattttggtttctc |
15583979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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