View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594R-Insertion-9 (Length: 315)
Name: NF1594R-Insertion-9
Description: NF1594R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594R-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 9 - 162
Target Start/End: Original strand, 11624738 - 11624891
Alignment:
| Q |
9 |
gcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagt |
108 |
Q |
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| T |
11624738 |
gcacccaccggaacatttctcatggttccacctgcagtccaatatctttgacacgccttgcagaaatagcgcggctgattgacgttgtaattattgtagt |
11624837 |
T |
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| Q |
109 |
aacagaactttgtgtccgcgctgttgcagcgtggacacaggagtaatttgtctg |
162 |
Q |
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| T |
11624838 |
aacagaactttgtgtccgcgctgttgcagcgtggacacaggagtaatttgtctg |
11624891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 235 - 315
Target Start/End: Original strand, 11624964 - 11625038
Alignment:
| Q |
235 |
aagtttcttcatctatggaaggtgtttttgggttctgaataccctccggtaatgttgctgctgaattgttgttgttcttga |
315 |
Q |
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| T |
11624964 |
aagtttcttcatctatggaaggtgtttttgggtt------accctccggtaatgttgctgctgaattgttgttgttcttga |
11625038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 125
Target Start/End: Complemental strand, 31771910 - 31771803
Alignment:
| Q |
18 |
ggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaact |
117 |
Q |
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| T |
31771910 |
ggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggttgacattgtaattgttgaagtaacaaaatt |
31771811 |
T |
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| Q |
118 |
ttgtgtcc |
125 |
Q |
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| T |
31771810 |
tggtgtcc |
31771803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 2823737 - 2823621
Alignment:
| Q |
9 |
gcacccaccggaacatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagt |
108 |
Q |
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| T |
2823737 |
gcacctaccggtacgtttctcatggttccaccggcagtccaatatctctggcagttcttgcagaaatgacggggttggttgacattgtaattattatagt |
2823638 |
T |
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| Q |
109 |
aacagaactttgtgtcc |
125 |
Q |
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| T |
2823637 |
agcagaacttcgtgtcc |
2823621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 18193495 - 18193381
Alignment:
| Q |
31 |
tggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttgtgtccgcgct |
130 |
Q |
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| T |
18193495 |
tggttcctccggcagtccaatatctctgacagtttttgcagaagtgtcggggctggttggcgttgtaattattgtagtaacaaaattttgtgtctacgct |
18193396 |
T |
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| Q |
131 |
gttgcagcgtggaca |
145 |
Q |
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| T |
18193395 |
tttgcatcttggaca |
18193381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 18188204 - 18188160
Alignment:
| Q |
81 |
ggctgattgacgttgtaattattgtagtaacagaactttgtgtcc |
125 |
Q |
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| T |
18188204 |
ggctggttggcgttgtaattattgtagtaacaaaattttgtgtcc |
18188160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 3775700 - 3775596
Alignment:
| Q |
21 |
acatttctcatggttccgcctgcagtccaatatctttgacacgccttgcaaaaatagcgcggctgattgacgttgtaattattgtagtaacagaactttg |
120 |
Q |
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| T |
3775700 |
acatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaatttgg |
3775601 |
T |
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| Q |
121 |
tgtcc |
125 |
Q |
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||||| |
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| T |
3775600 |
tgtcc |
3775596 |
T |
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