View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1594_high_4 (Length: 333)

Name: NF1594_high_4
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1594_high_4
NF1594_high_4
[»] chr6 (5 HSPs)
chr6 (155-320)||(28073919-28074084)
chr6 (155-320)||(28016794-28016950)
chr6 (11-101)||(28074138-28074229)
chr6 (233-283)||(27916271-27916321)
chr6 (25-59)||(28034798-28034832)
[»] chr5 (1 HSPs)
chr5 (192-221)||(12240136-12240165)


Alignment Details
Target: chr6 (Bit Score: 166; Significance: 8e-89; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 155 - 320
Target Start/End: Complemental strand, 28074084 - 28073919
Alignment:
Q  155 gcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaactgaagtgaagtctaactaatttctgtatt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28074084 gcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaactgaagtgaagtctaactaatttctgtatt 28073985  T
Q  255 ttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattg 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28073984 ttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattg 28073919  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 320
Target Start/End: Complemental strand, 28016950 - 28016794
Alignment:
Q  155 gcaattttctctttctatagagcttaggaaaagacccacaaactaactaaaatcctaactaactaacaaactgaagtgaagtctaactaatttctgtatt 254  Q
    ||||||| |||||||||||||| | ||||||||| | |||| ||||||| |||  ||| ||||||||         |||||||||||||||||||  | |    
T  28016950 gcaatttgctctttctatagagatgaggaaaagatcaacaacctaactataatgttaattaactaac---------tgaagtctaactaatttctacaat 28016860  T
Q  255 ttctaataaaccatattgatgaaacatgtattttagtttctagcaggctatgccagatgattattg 320  Q
    ||||||||||||||||||||||||||||| | | |||||||| ||||||| | |||||||||||||    
T  28016859 ttctaataaaccatattgatgaaacatgtttctcagtttctaccaggctaggtcagatgattattg 28016794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 28074229 - 28074138
Alignment:
Q  11 caaaggatgacagctgaagatttatctcataggtaaaataagcttgaga-nnnnnnnnngttggtagatatgcttgagagcttgatggagag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  28074229 caaaggatgacagctgaagatttatctcataggtaaaataagcttgagattttttttttgttggtagatatgcttgagagcttgatggagag 28074138  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 27916321 - 27916271
Alignment:
Q  233 aagtctaactaatttctgtattttctaataaaccatattgatgaaacatgt 283  Q
    ||||||||||||||||| || |||||||||||| ||||||||| |||||||    
T  27916321 aagtctaactaatttctataatttctaataaactatattgatggaacatgt 27916271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 28034832 - 28034798
Alignment:
Q  25 tgaagatttatctcataggtaaaataagcttgaga 59  Q
    |||||||||||||||||||||||||||||||||||    
T  28034832 tgaagatttatctcataggtaaaataagcttgaga 28034798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 12240136 - 12240165
Alignment:
Q  192 acaaactaactaaaatcctaactaactaac 221  Q
    ||||||||||||||||||||||||||||||    
T  12240136 acaaactaactaaaatcctaactaactaac 12240165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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