View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594_low_10 (Length: 236)
Name: NF1594_low_10
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 38708026 - 38708229
Alignment:
| Q |
14 |
attatacttggagataaaacatttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtaggtcacattagtcattta |
113 |
Q |
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| T |
38708026 |
attatacttggagataaaacatttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtcggtcacattagtcattta |
38708125 |
T |
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| Q |
114 |
taaagtctctgttgagatttatttaacctacatttgaaatttggtttttcagacttcattgaatgcgagttgttttttcctttcgattcttgtttagact |
213 |
Q |
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| T |
38708126 |
taaagtctctgttgagatttatttaacctgcatttgaaatttggtttttcagacttcattgaatgcgagttgttttttcctttcgattcttgtttagact |
38708225 |
T |
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| Q |
214 |
tata |
217 |
Q |
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|||| |
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| T |
38708226 |
tata |
38708229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 36 - 197
Target Start/End: Original strand, 10046259 - 10046419
Alignment:
| Q |
36 |
ttaatatgtttggtccatgggaaagagctacaaatttggtctttaaatatttcaaatgtaggtcacattagtcatttataaagtctctgttgagatttat |
135 |
Q |
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|||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||| | ||| |||||||||| || |||| ||||||||||||||| |
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| T |
10046259 |
ttaatacgtttggtccatggaaaa-agctacaaatttggtctttaaatatttcaaatgtcgatcaaattagtcattaatgaagtatctgttgagatttat |
10046357 |
T |
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| Q |
136 |
ttaacctacatttgaaatttggtttttcagacttcattgaatgcgagttgttttttcctttc |
197 |
Q |
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| T |
10046358 |
ttaaccgacatttgaaatttggtttttcagacttcattgaatgcgagttttttttttctttc |
10046419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 42449751 - 42449709
Alignment:
| Q |
58 |
aagagctacaaatttggtctttaaatatttcaaatgtaggtca |
100 |
Q |
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| T |
42449751 |
aagagctacaaagttggtctttcaatatttcaaatgtcggtca |
42449709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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