View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594_low_4 (Length: 409)
Name: NF1594_low_4
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 21 - 393
Target Start/End: Complemental strand, 571210 - 570837
Alignment:
| Q |
21 |
cagacaagtcatatcaaaattaaagtaggtatagttggcgagaacaaaacaaaatcataatgttctatcatgtatttctagccaaatcattggcctaagt |
120 |
Q |
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| T |
571210 |
cagacaagtcatatcaaaattaaagtaggtatagttggcgagaacaaaacaaaatcataatgttctatcatgtatttctagccaaatcattggcctaagt |
571111 |
T |
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| Q |
121 |
ctttcttagtacatgtttgaattcaattttggtatataaaagcgattaggctgccttgagtcactttctcatacgacctaccttaaaattgtt-aactat |
219 |
Q |
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| T |
571110 |
ctttcttagtacatgtttgaattcaattttggtatataaaagcgattaggctgccttgagtcactttctcatacgacctaccttaaaattgttaaaccat |
571011 |
T |
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| Q |
220 |
ccatgttgtagccaaacctttcttagtacaaatgatgtactatggatcggggcatctagtcatggcttattccacaaaatagaagagtaacagaaaccaa |
319 |
Q |
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| T |
571010 |
ccatgttgtagccaaacctttcttagtacaaatgatgaactatggatcagggcatctagtcatggcttattccacaaaatagaagagtaacagaaaccaa |
570911 |
T |
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| Q |
320 |
ctactaaaactaactacctaacagaaagcaggtttataattaattcatgctttctctaattagcttctatcaat |
393 |
Q |
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| T |
570910 |
ctactaaaactaactacctaacagaaagcagatttataattaattcattctttctctaattagcttctatcaat |
570837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 93 - 133
Target Start/End: Complemental strand, 568627 - 568587
Alignment:
| Q |
93 |
tatttctagccaaatcattggcctaagtctttcttagtaca |
133 |
Q |
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| T |
568627 |
tatttctagcaaaatcattgacctaagtttttcttagtaca |
568587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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