View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1594_low_9 (Length: 236)
Name: NF1594_low_9
Description: NF1594
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1594_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 21915639 - 21915420
Alignment:
| Q |
1 |
tcagagtgctctgagggttttttagaactcttctttggatccttttgctttgcgcaatcagtggcataattgtacgaacgttggtgtattgatcctttct |
100 |
Q |
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| T |
21915639 |
tcagagtgctctgagggttttttagaactcttctctggttccttttgctttgcgcaatcagtggcataattgtatgaacgttggtgtattgatcctttct |
21915540 |
T |
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| Q |
101 |
ttgcatatttatcgtgaagtaaacagttgtacagataagttggataatcacggacatggtgtcataagtagtttctggtgggatgttttacccactttta |
200 |
Q |
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| T |
21915539 |
tcgcatatttatcgtgaagtaaacagttgtacagataagttggctaatcatggatatggtgtcacgagtagtttctggtgtgatgttttacccactttta |
21915440 |
T |
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| Q |
201 |
ttagccaggatatttttaga |
220 |
Q |
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|||||||||||||||||||| |
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| T |
21915439 |
ttagccaggatatttttaga |
21915420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 216
Target Start/End: Complemental strand, 19092109 - 19091918
Alignment:
| Q |
25 |
gaactcttctttggatccttttgctttgcgcaatcagtggcataattgtacgaacgttggtgtattgatcctttctttgcatatttatcgtgaagtaaac |
124 |
Q |
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|||| ||||||||| | |||| |||||||||||| |||||| |||||| ||| | |||| | | |||| | |||| ||||| |||| ||| | ||| |
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| T |
19092109 |
gaacacttctttggttattttttctttgcgcaatcggtggcacaattgtgtgaatgctggtatctcgatcttgtcttcccatatctatcatgagggtaac |
19092010 |
T |
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| Q |
125 |
agttgtacagataagttggataatcacggacatggtgtcataagtagtttctggtgggatgttttacccacttttattagccaggatatttt |
216 |
Q |
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||||| | ||||||||| ||| || || |||| ||||| || | |||||||||||||||||||| | ||||||||||||||||| |||| |
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| T |
19092009 |
ggttgttctgataagttgactaaccatgggcatgatgtcacaaattttttctggtgggatgttttactcgcttttattagccaggatttttt |
19091918 |
T |
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