View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15950_high_2 (Length: 316)
Name: NF15950_high_2
Description: NF15950
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15950_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 35080250 - 35080538
Alignment:
| Q |
18 |
gtatttgaagtccttgcctctaaggtcacatatgtgcttaacaaattcatggatgacaacaacaaaatgggaattttgttttatgaaaataaccattacg |
117 |
Q |
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| T |
35080250 |
gtatttgaagtacttgcctctaaggtcacatatgtgcttaacaaattcatggatgacaacaacaaaatgggaattttgttttatgaaaataaccattacg |
35080349 |
T |
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| Q |
118 |
agcttgatatcttgcttgaggattatttaactaaaatgaaagggaccctatccgaataattgagctaccagagcgtgtcaatatttctaaaaaagacata |
217 |
Q |
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| T |
35080350 |
agcttgatatcttgcttgaggattatttaactaaaatgaaagggaccctatccgaataattgagctaccagagcgtgtcaatattcccaaaaaatacata |
35080449 |
T |
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| Q |
218 |
aattataaaccaataattatttgaatattcgtaagctgattaagattgttgttatcgttagaattttttgcatatttctcggttctctg |
306 |
Q |
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| T |
35080450 |
aaataaaaaccaataattatttgaatattcgtgagctgattaagattgttgttatcgttagaattttttgcatatttctcggttctctg |
35080538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 20 - 294
Target Start/End: Original strand, 35081314 - 35081591
Alignment:
| Q |
20 |
atttgaagtccttgcctctaaggtcacatatgtgcttaacaaattcatggatgacaacaacaaaatgggaattttgttttatgaaaataaccattacgag |
119 |
Q |
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| T |
35081314 |
atttgaagtacttacctctaatgtcacatatgtgcttaaaaaaatcatggatgataacagcaaaataggaattttgttttatgaaaataaccattatgag |
35081413 |
T |
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| Q |
120 |
cttgatatcttgcttgaggattatttaactaaaatgaaagggaccct-atccgaataattgagctaccagagcgtgtcaatatt-tctaaaaaagacat- |
216 |
Q |
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| T |
35081414 |
cttgatatctttcttgaggattatttaactaaaatgaaagggaacctcagctgagaaatcgagttgccagagcgtgtcaatattcccaaaaaaagacata |
35081513 |
T |
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| Q |
217 |
aaattataaaccaataattatttgaatattcgtaagctgattaagattgttgttatcgttagaattttttgcatattt |
294 |
Q |
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| T |
35081514 |
aaattaaaaaacaataatcgttcgaatattcatgagctgattgagattgttgttatcgttggaactttttgcatattt |
35081591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 77 - 305
Target Start/End: Complemental strand, 42993226 - 42992989
Alignment:
| Q |
77 |
caacaaaatgggaattttgttttatgaaaataaccattacgagcttgatatcttgcttgaggattatttaactaaaat------gaaagggaccct-atc |
169 |
Q |
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| T |
42993226 |
caacaaaatgagaattttgttttatgaaaataatcggtgcgagcttgatatcttgcttgaggattatttaactaaaatgaaaatgaaagggaccctcaac |
42993127 |
T |
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| Q |
170 |
cgaataattgagctaccagagcgtgtcaatatttctaaaaaagacataaa--ttataaaccaataattatttgaatattcgtaagctgattaagattgtt |
267 |
Q |
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| T |
42993126 |
cgaataattgcattgccataatgtgccaatattcctaaaaaagacataaaattaaaaaaacaataaccgtttgaatatccatgagctgattgagattgtc |
42993027 |
T |
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| Q |
268 |
gttatcgttagaattttttgcatatttctcggttctct |
305 |
Q |
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| T |
42993026 |
gttatcgctggaactttttgcatgtttctcagttctct |
42992989 |
T |
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